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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 13:21:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus DNA, clone:LjB06h24_f.
AG222034.1:634-653
TCATATTAAATTCAAAATACCAAATTGATG634GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Lotus japonicus genomic DNA, chromosome 6, clone: LjT34O10, TM0880.
AP010122.1:73975-73994
TCATATTAAATTCAAAATACCAAATTGATG73975GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:55684957-55684976
TCATATTAAATTCAAAATACCAAATTGATG55684957GTCCCAGTCATGATCAAAAGTAATTTATAACTTTATTGAAAAATTAGAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828093.1:540843569-540843588
CTCGTCTTCATCATCAAGGAAGAGAGATAG540843569GTCCCAGTCATGATCAAAAGGATTCTTGGGACGACTAGGAACCAGGCTAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX459976.1:552424118-552424137
CTCGTCTTCATCATCAAGGAAGAGAGATAG552424118GTCCCAGTCATGATCAAAAGGATTCTTGGGACGACTAGGAACCAGGCTAG
Agrostemma githago genome assembly, chromosome: 18.
OY288256.1:16269954-16269973
GTGAATTTCCTGATGATGCTAGAGCTGTCC16269954CTTTTGATCATGACTGGGACTCAAGCAGCCGAGACTCCGAGGACAGCGAG
Urbanus simplicius genome assembly, chromosome: 3.
OX453059.1:2923579-2923598
GTGGCGTCTTCTATTGTTAATTGTTCTTCA2923579CTTTTGATCATGACTGGGACTTTTTGAAGGGGAGGAAGTTCAGTTAAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCCCAGTCATGATCAAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCCAGTCATGATCAAAAG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCCAGTCATGATCAAAAG&k=0&no_gap=0&offset=0&limit=50
0.158 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTTGATCATGACTGGGAC&k=0&no_gap=0&offset=0&limit=45
0.160 | 0.001 | cgi_end;

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