GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:13:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:8246590-8246609
CCCAATCGTTGATGCCACACATGAGAAGAG8246590GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGTTGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:17562554-17562573
CCCAAACGTTGATGCCACACATGAGAAGAG17562554GTCCTTATTGCAGAATGAGCATGAACCTTCGATGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:23728089-23728108
CCCAAACGTTGATGCCACACTTGAGAAGAG23728089GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:25826323-25826342
CCCAAATGTTGATGCCAAACATGAGAGGAG25826323GTCCTTATTGCAGAATGAGCATGAACCTTCATTGAAGTATAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:11300231-11300250
CCCAAACGTTGATGCCACACTTGAGAAGAG11300231GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:31146430-31146449
CCCAAACGTTGATGCCACACATGAGAAGAG31146430GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:33619604-33619623
CCCAAACGTTGATGCCAAATATGAGAAGAG33619604GTCCTTATTGCAGAATGAGCATGAACCTTCGTTGCAGCAGAAGAAGAAGC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:33854853-33854872
CCCAAACGTTGATGCCACACATGAGAAGAG33854853GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGACGAAGC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:16444424-16444443
CCCAATCGTTGATGCCACACATGAGAAGAG16444424GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGTTGAAGAAGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:29947418-29947437
CCCAAACGTTGATGCCACACTTGAGAAGAG29947418GTCCTTATTGCAGAATGAGCATGAACTTGCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:24868307-24868326
CCCAAATGTTGATGCCAAACATGAGAGGAT24868307GTCCTTATTGCAGAATGAGCATGAACCTTCATTGAAGTAGAAGAAGAAGC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:9964059-9964078
TCCAAACGTTGATGCCAAACATGAGAGGAG9964059GTCCTTATTGCAGAATGAGCATGAATCTTCGTTGCAGTAGAAGAAGCATA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:12534564-12534583
CCCAAACGTTGATGCCACACATGAGAATAG12534564GTCCTTATTGCAGAATGAGCATGAACCTTCGATGCAGTTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:40710257-40710276
CCCAAACGTTGATGCCACACATGAGAAGAG40710257GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:11756075-11756094
CCCAAACGTTGATGCCATACATGAGAAGAG11756075GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:21029839-21029858
CCCAAACGTTGATGCCACACATGAGAAGAG21029839GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:29775394-29775413
CCCAATCGTTGATGCCACACATGAGAAGAG29775394GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGTTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:23499578-23499597
CCCAAACGTTGATGCCAAACATGAGAGGAG23499578GTCCTTATTGCAGAATGAGCATGAATCTTTGTTACAGTAGAAGAAGCAGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:37956955-37956974
CCCAAACGTTGATGCCACACATGAGAAGAG37956955GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGTAGTTGAAGAAGAAGC
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:4720445-4720464
CCCAAACGTTGATGCCACACATGAGAAGAG4720445GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:32809859-32809878
CCCAAACGTTGATGCCAAACATGAGAAGAG32809859GTCCTTATTGCAGAATGAGCATGAACCTTCGTTGCAGCTGAAAAAGAAGC
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:29229144-29229163
CCCAATCGTTGATGCCACACATGAGAAGAG29229144GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGTTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 2.
OU696678.1:12506249-12506268
CCCAAACGTTGATGCCACACATGAGAATAG12506249GTCCTTATTGCAGAATGAGCATGAACCTTCGATGCAGTTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 9.
OU696685.1:18461791-18461810
CCCAAACGTTGATGCCACACATGAGAAGAG18461791GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 3.
OU744544.1:4987707-4987726
CCCAAACGTTGATGCCACACATGAGAAGAG4987707GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 9.
OU744550.1:18622215-18622234
CCCAAACGTTGATGCCACACATGAGAAGAG18622215GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 10.
OU744551.1:33010426-33010445
CCCAAACGTTGATGCCAAACATGAGAAGAG33010426GTCCTTATTGCAGAATGAGCATGAACCTTCGTTGCAGCTGAAAAAGAAGC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9905591-9905610
TCCAAACGTTGATGCCAAACATGAGAGGAG9905591GTCCTTATTGCAGAATGAGCATGAATCTTCGTTGCAGTAGAAGAAGCATA
Malus domestica genome assembly, chromosome: 15.
OU744556.1:29644253-29644272
CCCAATCGTTGATGCCACACATGAGAAGAG29644253GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGTTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 3.
OU744955.1:29968325-29968344
CCCAAACGTTGATGCCACACATGAGAAGAG29968325GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 4.
OU744956.1:1854247-1854266
CCCAAATGTTGATGCCACACATGAGAAGAG1854247GTCCTTATTGCAGAATGAGCATGAACCTTTGATGCAGTTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 5.
OU744957.1:40348374-40348393
CCCAAACGTTGATGCCACACATGAGAAGAG40348374GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 10.
OU744962.1:33754388-33754407
CCCAAACGTTGATGCCAAACATGAGAAGAG33754388GTCCTTATTGCAGAATGAGCATGAACCTTCGTTGCAGCTGAAAAAGAAGC
Malus domestica genome assembly, chromosome: 17.
OU744969.1:7137862-7137881
CCCAAACGTTGATGCCACACATGAGAAGAG7137862GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 2.
OU744992.1:12514898-12514917
CCCAAACGTTGATGCCACACATGAGAATAG12514898GTCCTTATTGCAGAATGAGCATGAACCTTCGATGCAGTTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 7.
OU744997.1:11784227-11784246
CCCAAACGTTGATGCCATACATGAGAAGAG11784227GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 8.
OU744998.1:5728174-5728193
CCCAAACGTTGATGCCATACATGAGAAGAG5728174GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 9.
OU744999.1:18086097-18086116
CCCAAACGTTGATGCCACACATGAGAAGAG18086097GTCCTTATTGCAGAATGAGCATGAACCTTCGGTGCAGGTGAAGAAGAAGC
Malus domestica genome assembly, chromosome: 10.
OU745000.1:32834492-32834511
CCCAAACGTTGATGCCAAACATGAGAAGAG32834492GTCCTTATTGCAGAATGAGCATGAACCTTCGTTGCAGCTGAAAAAGAAGC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9779844-9779863
TCCAAACGTTGATGCCAAACATGAGAGGAG9779844GTCCTTATTGCAGAATGAGCATGAATCTTCGTTGCAGTAGAAGAAGCATA
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:29294461-29294480
CCCAAACGTTGATGCCAAACATGAAAGGAG29294461GTCCTTATTGCAGAATGAGCATGAATCTTTGTTGTAGTAGAAGAAGCAGA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:27574556-27574575
CTCAAACGTTGATGCCAAACATAAGATGAG27574556GTCCTTATTGCAGAATGAGCATGAATCTTCGTTGCCGTAGAAAAAGAAGC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21042657-21042676
CCCAAACGTTGATGCCAAACATGAGAGAAA21042657GTCCTTATTGCAGAATGAGCATGAACATTCGTTGCAGTAGAAGAAGAAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:36787423-36787442
GCTTCTTCTTCACCTGCACCAAAGGTTCAT36787423GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:8017956-8017975
GCTTCTTCTTCACCTGCACCGAAGGTTCAT8017956GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:4308955-4308974
GCTTCTTCTTCACCTGCACCGAAGGTTCAT4308955GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:4258406-4258425
GCTTCTTCTTCACCTGCACCGAAGGTTCAT4258406GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:25403849-25403868
GCTTCTTCTTCACCTGCACCGAAGGTTCAT25403849GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:7659114-7659133
GCTTCTTCTTCACCTGCACCGAAGGTTCAT7659114GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:4382460-4382479
GCTTCTTCTTCACCTGCACCGAAGGTTCAT4382460GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:4457521-4457540
GCTTCTTCTTCACCTGCACCGAAGGTTCAT4457521GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:28172732-28172751
GCTTCTTCTTCAACTGCATCGAAGGTTCAT28172732GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus domestica genome assembly, chromosome: 7.
OU696683.1:3375621-3375640
GCTTCTTCTTCACCTGCACCGAAGGTTCAT3375621GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:4500218-4500237
GCTTCTTCTTCACCTGCACCGAAGGTTCAT4500218GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus domestica genome assembly, chromosome: 14.
OU696690.1:8845187-8845206
GCTTCTTCTTCAACTGCACCGAAGGTTCAT8845187GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACAATTGGG
Malus domestica genome assembly, chromosome: 7.
OU744548.1:10156341-10156360
GCTTCTTCTTCACCTGCACCGAAGGTTCAT10156341GCTCATTCTGCAATAAGGACCTCTTCTCATGTGTGGCATCAACGTTTGGG
Malus domestica genome assembly, chromosome: 7.
OU744959.1:5001218-5001237
TCTGCTTCTTCTACTGCAACAAAGATTCAT5001218GCTCATTCTGCAATAAGGACATCCTCTCATGTTTGGCATCAACGTTTGGG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:24326836-24326855
GCTTCTTCTTCAACTGCATCGAAGGTTCAT24326836GCTCATTCTGCAATAAGGACCTATTCTCATGTGTGGCATCAACGTTTGGG
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:2043598-2043617
GCTTCTTCTTCACCTGCACCGCAAGTTCAT2043598GCTCATTCTGCAATAAGGACCTCTTCTCAAGTGTGGCATCAACGTTTGGG
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:24367065-24367084
GCTTCTTCTTCTACTGCAACGAAGGTCCAT24367065GCTCATTCTGCAATAAGGACATCCTTTCATGTTTGGCATCAACGTTTGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCCTTATTGCAGAATGAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCCTTATTGCAGAATGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.364 | 0.355 | search_plus_done; http://172.18.8.135:50400/match?q=GTCCTTATTGCAGAATGAGC&k=0&no_gap=0&offset=0&limit=50
0.497 | 0.134 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCATTCTGCAATAAGGAC&k=0&no_gap=0&offset=0&limit=7
0.508 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).