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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 09:01:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Daucus carota subsp. sativus cultivar DH1 chromosome 4.
CP093346.1:44718842-44718862
AACTTGCTTCTGTACCAGTAGACTCCCTTA44718842GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCCCTGTAC
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22469696-22469716
ATATCCTTTCGGTACCAGTAGACTCCTTTA22469696GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCGGTAC
Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22476964-22476984
ATATCCTTTTTGTACCAGTAGACTCCTTTG22476964GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCTGTAC
Daucus carota isolate Kuroda chromosome 4.
CP125304.1:33008707-33008727
AACTTGCTTCTGTACCAGTAGACTCCCTTA33008707GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCCCTGTAC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34668815-34668835
ATATCCTTTCTGTACCAGTAGACTCCTTTA34668815GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCGGTAC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:34674635-34674655
ATATCCTTTCTGTACCAGTAGACACCTTTT34674635GTCTCGCCTTCATCTTTCTCCACGTAAATGCATTCCTTCATTTCTCTGTAC
Hermetia illucens genome assembly, chromosome: 6.
LR899014.1:86289503-86289523
TTCGTAACAAGTTGTTTTCCGTGTAGGGTT86289503GTCTCGCCTTCATCTTTCTCCGTCTGCAGCGGTCACCACGTGGAGGTGGAG
Cenchrus purpureus cultivar elephant grass chromosome A7.
CP053460.1:154596421-154596441
ATCAGGTCTGTATGCATGCTTCAAAGGGAA154596421GGAGAAAGATGAAGGCGAGACGTACCCTACCACTGCTTGGAGAAGTCAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTCTCGCCTTCATCTTTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTCTCGCCTTCATCTTTCTCC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.313 | 0.304 | search_plus_done; http://172.18.8.135:50400/match?q=GTCTCGCCTTCATCTTTCTCC&k=0&no_gap=0&offset=0&limit=50
0.417 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGAAAGATGAAGGCGAGAC&k=0&no_gap=0&offset=0&limit=43
0.418 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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