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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:53:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCR01K04, 5' end sequence.
FY440085.1:788-809
ACGATTAACGTCGATGACACGTCTGGAGGC788GTGAAACGAGGTTGCTGCTCTACCTAAACGAAAAGGTAATAATATATGTTTT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:46378787-46378808
ACGATTAACGTCGATGACACGTCTGGTGGC46378787GTGAAACGAGGTTGCTGCTCTACCTAAAACGGAAAAGGTAATAATATATGTT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:46378787-46378808
ACGATTAACGTCGATGACACGTCTGGTGGC46378787GTGAAACGAGGTTGCTGCTCTACCTAAAACGGAAAAGGTAATAATATATGTT
RR4A728JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV571285.1:197-218
AAACATATATTATTACCGTTTCGTTTTAGG197TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATTGACGTTAATCGT
RR4B305JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV573579.1:262-283
AACATATATTATTACCTTTTCCGTTTTAGG262TAGAGCAGCAACCTCGTTTCACACCTCCAGACGTGTCATCGACGTTAATCGT
RS1B145JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721291.1:224-245
AACGTATATTATTACCTTTTCCGTTTTAGG224TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTATCATCGACGTTAATCGT
RS2AS78JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730780.1:221-242
AACATATATTATTACCTTTTCCGTTTTAGG221TAGAGCAGCAACCTCGTTTCACGCCACCAGACGTGTCATCGACGTTAATCGT
RR1BT15JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX751144.1:216-237
AAACATATATTATTACCGTTTCGTTTTAGG216TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT
RR3CB83JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX768111.1:234-255
AACATATATTATTACCTTTTCCGTTTTAGG234TAGAGCAGCAACCTCGTTTCACGCCACCAGACGTGTCATCGACGTTAATCGT
RS2BP61JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX899204.1:330-351
AACATATATTATTACCTTTTCCGTTTTAGG330TAGAGCAGCAACCTCGTTTCACGCCACCAGACGTGTCATCGACGTTAATCGT
RR1D739JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893671.1:283-304
GAACATATATTATTACCGTTTCGTTTTAGG283TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTATCATCCACGTTAATCGT
RR3DR18JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911071.1:218-239
AACATATATTATTACCTTTTCCGTTTTAGG218TAGAGCAGCAACCTCGTTTCACGCCACCAGACGTGTCATCGACGTTAATCGT
RR1FC21JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD530687.1:283-304
AAACATATATTATTACCGTTTCGTTTTAGG283TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT
RR1FK40JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD531235.1:259-280
AAACGTATATTATTACCGTTTCGTTTTAGG259TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTATCATCCACGTTAATCGT
RR3FJ77JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD547257.1:281-302
AAACATATATTATTACCGTTTCGTTTTAGG281TAGAGCAGCAACCTCGTTTCACGCCTCCAGATGTGTCATCGACGTTAATCGT
RR4FH94JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD555033.1:219-240
AACATATATTATTACCTTTTCCGTTTTAGG219TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACATTAATCGT
RS3FU46JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD950485.1:239-260
AACATATATTATTACCTTTTCCGTTTTAGG239TAGAGCAGCAACCTCGTTTCACGCCACCAGACGTGTCATCGACGTTAATCGT
RR1H094JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD961142.1:238-259
AAACATATATTATTACCATTTCGTTTTAGG238TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2650.
FX662143.1:318-339
AAACATATATTATTACCTTTTCGTTTTAGG318TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4929.
FX754068.1:318-339
AAACATATATTATTACCTTTTCGTTTTAGG318TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT
TSA: Raphanus sativus RS14403 mRNA sequence.
JT798950.1:247-268
AAACATATATTATTACCTTTTCGTTTTAGG247TAGAGCAGCAACCTCGTTTCACGCCTCCAGACGTGTCATCGACGTTAATCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGAAACGAGGTTGCTGCTCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGAAACGAGGTTGCTGCTCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.408 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=GTGAAACGAGGTTGCTGCTCTA&k=0&no_gap=0&offset=0&limit=50
1.489 | 1.081 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAGCAGCAACCTCGTTTCAC&k=0&no_gap=0&offset=0&limit=47
1.500 | 0.012 | cgi_end;

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