GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:11:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Camellia sinensis tea_rep_c3685 mRNA sequence.
KA283104.1:522-541
AAGATGATGGCCAAGAGGATATCGATGCAG522GTTGCTGTTGATTCGTCTGACATTTTCACTCACAAACAACTAACTGGACA
EST2449 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_95.M13+_G12.ab1, mRNA sequence.
GE652122.1:181-200
TGTCCAGTTAGTTGTTTGTGAGTGAAAATG181TCAGACGAATCAACAGCAACCTGCATCGATATCCTCTTGGCCATCATCTT
Tea223_2006-02-16_1/Tea223_A04_016_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476730.1:185-204
TGTCCAGTTAGTTGTTTGTGAGTGAAAATG185TCAGACGAATCAACAGCAACCTGCATCGATATCCTCTTGGCCATCATCTT
Silvanus unidentatus genome assembly, chromosome: 2.
OZ005758.1:25325027-25325046
TCTTCAGGACTTGCCGCATTTGATGTGTGT25325027TCAGACGAATCAACAGCAACCGCATGTATTATCGGCTGATGATAATATGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGCTGTTGATTCGTCTGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGCTGTTGATTCGTCTGA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGCTGTTGATTCGTCTGA&k=0&no_gap=0&offset=0&limit=50
0.331 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGACGAATCAACAGCAAC&k=0&no_gap=0&offset=0&limit=49
0.334 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).