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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:10:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Musa acuminata AAA Group Unigene80051_B1 mRNA sequence.
JV348006.1:155-174
GGCCGTGATGAGCGCCGTCTCCCCGAACTC155GTTGGTCTCGTTGACCACAGCCGACACCATCTCCGCGGTCACCGCTTCCA
TSA: Musa acuminata AAA Group Unigene76566_NK1 mRNA sequence.
JV389700.1:155-174
GGCCGTGATGAGCGCCGTCTCCCCGAACTC155GTTGGTCTCGTTGACCACAGCCGACACCATCTCCGCGGTCACCGCTTCCA
Allygus modestus genome assembly, chromosome: 5.
OY776116.1:38099709-38099728
TTTGTCATCAACTTTCAGCAAGGACGGTTT38099709GTTGGTCTCGTTGACCACAGTCACTTCAATCTCCTCCTTTGACCTCACCG
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:55037979-55037998
TGGAAGCGGTGACCGCGGAGATGGTGTCGG55037979CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCGTCACGGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:41231013-41231032
TGGAAGCGGTGACCGCGGAGATGGTGTCGG41231013CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:40028917-40028936
TGGAAGCGGTGACCGCGGAGATGGTGTCGG40028917CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:40933429-40933448
TGGAAGCGGTGACCGCGGAGATGGTGTCGG40933429CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:44830179-44830198
TGGGAGCGGTGACCGCGGAGATGGTGTCGG44830179CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGGTCTCGTTGACCACAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGGTCTCGTTGACCACAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.356 | 0.347 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGGTCTCGTTGACCACAG&k=0&no_gap=0&offset=0&limit=50
0.451 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTGGTCAACGAGACCAAC&k=0&no_gap=0&offset=0&limit=47
0.455 | 0.004 | cgi_end;

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