GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:00:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Camellia sinensis mRNA, clone: LR11C01, 5' end sequence, expressed in lateral roots.
FS944108.1:15-35
AAACCATTGCTCCT15GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAAGATGCACG
EST0804 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_04_92.M13+_D12.ab1, mRNA sequence.
GE650477.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGGGAAGATGCACG
EST1110 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_20.M13+_D03.ab1, mRNA sequence.
GE650783.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAGAGAGAGAG
EST1768 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_17_91.M13+_C12.ab1, mRNA sequence.
GE651441.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAAGATGCACGGA
EST3266 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_56.M13+_H07, mRNA sequence.
GE652939.1:31-51
TATCGGCCATTACGGCCGGGGATTGCTCCT31GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAAGATGCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTCTTGCACGCACGCAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCTTGCACGCACGCAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.707 | 0.698 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCTTGCACGCACGCAGAG&k=0&no_gap=0&offset=0&limit=50
0.799 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTGCGTGCGTGCAAGAAAC&k=0&no_gap=0&offset=0&limit=45
0.799 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).