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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:52:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11357.
FX731922.1:1016-1035
CTGAGGATTGAACCGACCGTCTAACATCGA1016GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
KBrS001P16R KBrS, Brassica rapa Sau3AI BAC library Brassica rapa subsp. pekinensis genomic clone KBrS001P16, genomic survey sequence.
DU827629.1:468-487
CTGAGGATTGAACCGACCGTCTAACATCGA468GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:8843117-8843136
CTGAGGATTGAACCGACCGTCTAACATCGA8843117GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:9013391-9013410
CTGAGGATTGAACCGACCGTCTAACATCGA9013391GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
Brassica rapa genome, scaffold: A01.
LR031571.1:8904903-8904922
CTGAGGATTGAACCGACCGTCTAACATCGA8904903GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8928968-8928987
CTGAGGATTGAACCGACCGTCTAACATCGA8928968GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA
Sesia apiformis genome assembly, chromosome: 30.
OU611977.1:5404038-5404057
ATGTATCGCAGTAATTTCGACAACTAAATG5404038GTTTGTCGGAGATTGGAGGATTACATTAGATGTATATACATATATATATG
BNARO1GH_T3_022_A10_23NOV2006_080 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES901390.1:145-164
TGGAAGACGCTGTCTCCACGATACCGAGGT145TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG
BR002028 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-003E01 5', mRNA sequence.
EX017384.1:421-440
TGGAAGACGCTGTCTCCACGATACCGAGGT421TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1938.
FX698438.1:846-865
TGGAAGACGCTGTCTCCACGATACCGAGGT846TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG
Brassica napus Protein phosphatase type 2c (ABI1) mRNA, complete cds.
MF284702.1:428-447
TGGAAGACGCTGTCTCCACGATACCGAGGT428TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTGTCGGAGATTGGAGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGTCGGAGATTGGAGGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.191 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGTCGGAGATTGGAGGA&k=0&no_gap=0&offset=0&limit=50
0.444 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTCCAATCTCCGACAAAC&k=0&no_gap=0&offset=0&limit=43
0.447 | 0.003 | cgi_end;

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