GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:41:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Erpetoichthys calabaricus genome assembly, chromosome: 5.
LR536436.2:230451541-230451560
TGATTCCCTGTTCTCCACCACTTTACATTG230451541TAATCTGTTCCATGTGCCTGTGGTTCTTTGCATGAAGAAAAACTTTCTAA
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:19671897-19671916
CTTGTTGCCATTTTGTTCTAACCATGTTCT19671897TAATCTGTTCCATGTGCCTGTGCGTGTGTGATGTCTGTGTGTATTTTCTT
Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-165D24.
AL159983.6:86674-86693
CATGTTTTCCTACACATCTGTGGCTTTCTG86674TAATCTGTTCCATGTGCCTGCGGTGCCTTTTCTTTCCATCTCTACTTAGA
Human DNA sequence from clone RP3-342H9 on chromosome 6.
AL136443.11:24322-24341
TCTAAGTAGAGATGGAAAGAAAAGGCACCG24322CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens DNA, chromosome 6, nearly complete genome.
AP023466.1:15370972-15370991
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15370972CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate CHM13 chromosome 6.
CP068272.2:15584053-15584072
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15584053CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate NA24385 chromosome 6.
CP139515.1:15692027-15692046
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15692027CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate NA24385 chromosome 6.
CP139538.1:15689392-15689411
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15689392CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Vespertilio murinus genome assembly, chromosome: 11.
OZ004715.1:47825294-47825313
CTGAAGGCATGTCCCTCGCCGACATCAAAG47825294CAGGCACATGGAACAGATTAGCAAGGCGTCGGGGCCTGAGGAGCTATAAC
Eukaryotic synthetic construct chromosome 6.
CP034505.1:15652004-15652023
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15652004CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034505.1:184628132-184628151
TCTAAGTAGAGATGGAAAGAAAAGGCACCG184628132CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034530.1:15652004-15652023
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15652004CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034530.1:184628132-184628151
TCTAAGTAGAGATGGAAAGAAAAGGCACCG184628132CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAATCTGITTCCATGTGCCTIG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATCTGITTCCATGTGCCTIG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.140 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=TAATCTGTTCCATGTGCCTG&k=0&no_gap=0&offset=0&limit=50
0.194 | 0.054 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGCACATGGAACAGATTA&k=0&no_gap=0&offset=0&limit=47
0.201 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).