GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-05 02:13:29, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Cannabis sativa PK18469.1_1.CasaPuKu mRNA sequence.
JP449841.1:1678-1697
GCGATTTGTTGTATTGTTTACTCATTCCTT1678TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.2_1.CasaPuKu mRNA sequence.
JP455004.1:452-471
GCGATTTGTTGTATTGTTTACTCATTCCTT452TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.3_1.CasaPuKu mRNA sequence.
JP457425.1:455-474
GCGATTTGTTGTATTGTTTACTCATTCCTT455TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
Cannabis sativa cultivar ERBxHO40_23 chromosome 4.
CP158647.1:963762-963781
GCGATTTGTTGTATTGTTTACTCATTCCTT963762TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245656004-245656023
GTGATTTGTTGCTTCATTTACACATTCCTT245656004TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245663803-245663822
GTGATTTGTTGTTTCATTTACTCGTTCCTC245663803TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
Corylus avellana genome assembly, chromosome: 11.
OZ219484.1:16459879-16459898
GCAATCTGTTGCTTCATCTACTCCTTCCTC16459879TATTGCACATACCCGAGAGACAGGGAGCGAGCAAGAATGCAGACACTAAT
Corylus avellana genome assembly, chromosome: 11.
OZ219484.1:16471270-16471289
GCAATCTGTTGCTTCATCTACTCCTTCCTC16471270TATTGCACATACCCGAGAGACAGGGAGAGAGCAAGAATGCAGACATTAAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq1.
LA372674.1:663-682
ACCAAAGCATCCATTCTTGCTCGATCGCGG663TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq2.
LA372675.1:349-368
ACCAAAGCATCCATTCTTGCTCGATCGCGG349TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Ficus carica Horaishi DNA, chromosome 4, sequence.
AP028885.1:32098546-32098565
ATCAAAGTATCCATTCTTGCTCGCTCGCGG32098546TCTCTCGGGTATGTGCAATAGAGGAAAGAGTAAATGAAGCAACAGATAGC
Ficus carica Caprifig 6085 DNA, chromosome 4, sequence.
AP028898.1:30729877-30729896
ATCAAAGTATCCATTCTTGCTCGCTCGCGG30729877TCTCTCGGGTATGTGCAATAGAGGAAAGAGTAAATGAAGCAACAGATAGC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031502.1:64625641-64625660
ACCAAAGCATCCATTCTTGCTCGATCGCGG64625641TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031502.1:64633448-64633467
ACCAAAGCATCCATTCTTGCTCGATCGCGG64633448TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031513.1:64106605-64106624
ACCAAAGCATCCATTCTTGCTCGATCGCGG64106605TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031513.1:64114397-64114416
ACCAAAGCATCCATTCTTGCTCGATCGCGG64114397TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031522.1:65315516-65315535
ACCAAAGCATCCATTCTTGCTCGATCGCGG65315516TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031522.1:65323310-65323329
ACCAAAGCATCCATTCTTGCTCGATCGCGG65323310TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031532.1:67156779-67156798
ACCAAAGCATCCATTCTTGCTCGATCGCGG67156779TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031532.1:67164573-67164592
ACCAAAGCATCCATTCTTGCTCGATCGCGG67164573TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031542.1:65595817-65595836
ACCAAAGCATCCATTCTTGCTCGATCGCGG65595817TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus Saaz DNA, chromosome 1, nearly complete sequence.
AP031542.1:65603611-65603630
ACCAAAGCATCCATTCTTGCTCGATCGCGG65603611TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031552.1:66460449-66460468
ACCAAAGCATCCATTCTTGCTCGATCGCGG66460449TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Humulus lupulus 10-12 DNA, chromosome 1, nearly complete sequence.
AP031552.1:66468256-66468275
ACCAAAGCATCCATTCTTGCTCGATCGCGG66468256TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
Humulus japonicus seta1 DNA, chromosome 1, nearly complete sequence.
AP038373.1:64050369-64050388
ACCAAAGCATTCATTCTAGCACTGTCGCGG64050369TCTCTCGGGTATGTGCAATAAAGGAATGAGTAAATGAAACAACAAAGTAC
Humulus japonicus seta1 DNA, chromosome 1, nearly complete sequence.
AP038373.1:64095280-64095299
ACCAAAGCATCTATTCTTGCTCGATCGCGG64095280TCTCTCGGGTATGTGCAATAAAGGAATGAATAAATGAAGCAACAGATCAC
Humulus japonicus seta1 DNA, chromosome 1, nearly complete sequence.
AP038373.1:73428951-73428970
ACCAAAGCATCTATTCTTGCTCGATCGCGG73428951TCTCTCGGGTATGTGCAATAAAGGAATGAATAAATGAAGCAACAAATCAC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4419885-4419904
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4419885TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4432471-4432490
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4432471TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3919408-3919427
ATTAATGTCTGCATTCTTGCTCTCTCCCTG3919408TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3932252-3932271
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG3932252TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Khaya senegalensis isolate HCNGB_00002341 chromosome 10.
CP135532.1:227958-227977
ATTAACGGATCCATTCTTGCCCTCTCCCGG227958TCTCTCGGGTATGTGCAATAAAGGAAGGAGTAGATGAAGCAGCAAATGGC
Cannabis sativa cultivar ERBxHO40_23 chromosome 4.
CP158657.1:80824501-80824520
ACCAAAGCATCCATTCTCGCTCGATCGCGG80824501TCTCTCGGGTATGTGCAATAAAGGAATGAGTAAACAATACAACAAATCGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4330363-4330382
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4330363TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4341819-4341838
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4341819TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Trifolium striatum genome assembly, chromosome: 7.
OZ060919.1:37726378-37726397
GCAAATGCAACCATTCTTGCTCGATCTCTG37726378TCTCTCGGGTATGTGCAATAAAGGAAAGAGTATATGATGCAGCAAATTGC
Corylus colurna genome assembly, chromosome: 10.
OZ247472.1:4199969-4199988
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4199969TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus colurna genome assembly, chromosome: 10.
OZ247472.1:4212792-4212811
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4212792TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Geranium pratense genome assembly, chromosome: 11.
OZ280733.1:112102415-112102434
ATTAAAGCTGCCATCCGAGCTACCTCCCTG112102415TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATTATGCAACAAAGTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TATTGCACATACCCGAGAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTGCACATACCCGAGAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.555 | 0.546 | search_plus_done; http://172.18.8.135:50900/match?q=TATTGCACATACCCGAGAGA&k=0&no_gap=0&offset=0&limit=50
3.354 | 2.799 | search_minus_done; http://172.18.8.135:50900/match?q=TCTCTCGGGTATGTGCAATA&k=0&no_gap=0&offset=0&limit=42
3.374 | 0.021 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).