GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Cannabis sativa PK18469.1_1.CasaPuKu mRNA sequence.
JP449841.1:1678-1697
GCGATTTGTTGTATTGTTTACTCATTCCTT1678TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.2_1.CasaPuKu mRNA sequence.
JP455004.1:452-471
GCGATTTGTTGTATTGTTTACTCATTCCTT452TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
TSA: Cannabis sativa PK18469.3_1.CasaPuKu mRNA sequence.
JP457425.1:455-474
GCGATTTGTTGTATTGTTTACTCATTCCTT455TATTGCACATACCCGAGAGACCGCGATCGAGCCAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245656004-245656023
GTGATTTGTTGCTTCATTTACACATTCCTT245656004TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:245663803-245663822
GTGATTTGTTGTTTCATTTACTCGTTCCTC245663803TATTGCACATACCCGAGAGACCGCGATCGAGCAAGAATGGATGCTTTGGT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq1.
LA372674.1:663-682
ACCAAAGCATCCATTCTTGCTCGATCGCGG663TCTCTCGGGTATGTGCAATAAAGGAATGTGTAAATGAAGCAACAAATCAC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp275552_c0_seq2.
LA372675.1:349-368
ACCAAAGCATCCATTCTTGCTCGATCGCGG349TCTCTCGGGTATGTGCAATAGAGGAACGAGTAAATGAAACAACAAATCAC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4419885-4419904
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4419885TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Rush chromosome 11.
CP125824.1:4432471-4432490
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4432471TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3919408-3919427
ATTAATGTCTGCATTCTTGCTCTCTCCCTG3919408TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus americana cultivar Winkler chromosome 11.
CP125835.1:3932252-3932271
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG3932252TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Khaya senegalensis isolate HCNGB_00002341 chromosome 10.
CP135532.1:227958-227977
ATTAACGGATCCATTCTTGCCCTCTCCCGG227958TCTCTCGGGTATGTGCAATAAAGGAAGGAGTAGATGAAGCAGCAAATGGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4330363-4330382
ATTAATGTCTGCATTCTTGCTCTCTCCCTG4330363TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC
Corylus avellana genome assembly, chromosome: ca11.
LR899433.1:4341819-4341838
ATTAGTGTCTGCATTCTTGCTCGCTCCCTG4341819TCTCTCGGGTATGTGCAATAGAGGAAGGAGTAGATGAAGCAACAGATTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TATTGCACATACCCGAGAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTGCACATACCCGAGAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.190 | 0.181 | search_plus_done; http://172.18.8.135:50400/match?q=TATTGCACATACCCGAGAGA&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCTCGGGTATGTGCAATA&k=0&no_gap=0&offset=0&limit=45
0.289 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).