GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:04:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CHO_OF717xh02r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET810065.1:386-405
GTTTGGAGGCCGAATCACGAGGAAAAGGTT386TATTGGAATAGAGAATTTGCTTGGATTGAGGTAAGTAACTCTTCTAATCT
Thecocarcelia acutangulata genome assembly, chromosome: 4.
OU612097.1:1359401-1359420
AATGTTTATAATATGTGAAAGAGCATCGAC1359401TATTGGAATAGAGAATTTGCTAAATATATATTCGTAGACAATGCCATGGA
Nemoura dubitans genome assembly, chromosome: X.
OV121073.1:58317570-58317589
GCGCTAGAAGGTCTTTTTCACAAAACTGCA58317570TATTGGAATAGAGAATTTGCAGAGGAGGTTTGCAAACAGAAAGTAAATTT
Hypomecis punctinalis genome assembly, chromosome: 8.
OX438802.1:637691-637710
ATTTTTGGTTTTGAATTCCCATATCAAATG637691TATTGGAATAGAGAATTTGCGTCAGTATACAATAGGCTAGATGACTTAAA
Culex pipiens genome assembly, chromosome: 2.
OZ004312.1:8163891-8163910
TTTTTGTTATGGAAGAATAACTCCAACTGT8163891TATTGGAATAGAGAATTTGCAGCAAAGCTAAAAGACACGTGTCGCCACCT
CHO_OF593xh03r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET961709.1:51-70
AGTTTAGAAGTATTACTTACCTCAAACCAT51GCAAATTCTCTATTCCAATATGCCCTTGCCTCGCGAATCGGCCTCTGAAC
Eilema sororculum genome assembly, chromosome: 24.
OU618556.1:16268021-16268040
TCTGCATAGTAAACAATATCGTAGCCGCAT16268021GCAAATTCTCTATTCCAATACAAATTGCATATCAAAAACTTTTACATTGT
Bemisia tabaci genome assembly, chromosome: 8.
OU963869.1:39877347-39877366
AGCACGAAATTCATCAAATTTCAGACACCT39877347GCAAATTCTCTATTCCAATATCCAGCTCGCTAGAGGCCCCTCTCCATCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TATTGGAATAGAGAATTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TATTGGAATAGAGAATTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.239 | 0.230 | search_plus_done; http://172.18.8.135:50400/match?q=TATTGGAATAGAGAATTTGC&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.189 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAATTCTCTATTCCAATA&k=0&no_gap=0&offset=0&limit=45
0.430 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).