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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:26:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Dianthus caryophyllus mRNA, clone: CES05B06, 5' end sequence.
FY384012.1:90-109
CAGTCTCCTCTGCGCACGTTATCATCATCA90TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Dianthus caryophyllus mRNA, clone: CES15H03, 5' end sequence.
FY387941.1:104-123
CAGTCTCCTCTGCGCACGTTATCATCATCA104TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Dianthus caryophyllus mRNA, clone: CES24G23, 5' end sequence.
FY391323.1:28-47
GCTCCTCTGCGCACGTTATCATCATCA28TCACCCTCATTTTCTACGCCTACACACCTCCTTAACGTGCGCCGTCGTCC
Eristalinus sepulchralis genome assembly, chromosome: 4.
OX122885.1:2112254-2112273
TTGTTCTCTTTCCCGCAGCAGTTGTCGCCG2112254TCACCCTCATTTTCTACGCCCCCTTCGTCGTGATACTCGTTTGGCTGCCC
Philonthus spinipes genome assembly, chromosome: 15.
OY720314.1:10184358-10184377
ATCAAAATATTAATTTAATCAATAAAATAA10184358TCACCCTCATTTTCTACGCCTTTTTTTTATTTATATGCATGTTTTCAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCACCCTCATTTTCTACGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCACCCTCATTTTCTACGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.485 | 0.476 | search_plus_done; http://172.18.8.135:50400/match?q=TCACCCTCATTTTCTACGCC&k=0&no_gap=0&offset=0&limit=50
0.563 | 0.079 | search_minus_done; http://172.18.8.135:50400/match?q=GGCGTAGAAAATGAGGGTGA&k=0&no_gap=0&offset=0&limit=45
0.563 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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