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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:18:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ZDSB28F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB28, mRNA sequence.
JZ495071.1:90-113
AGACGTTATTTTTAGCAAACAACCACTAAT90TCCATACATACATAAGGTAAAGAAATTAAAATTTCATGTTCAACTTCTCATTTC
TSA: Camellia sinensis tea_rep_c691 mRNA sequence.
KA280133.1:20-43
AGTTCAAACAACCACTAAT20TCCATACATACATAAGGTAAAGAATTAAAATTTCATGTTCAACTTCTCATTTCT
JP 2003088373-A/1: A Caffeine Synthase and A Gene thereof.
BD285420.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
JP 2003088373-A/2: A Caffeine Synthase and A Gene thereof.
BD285421.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
Camellia sinensis mRNA, clone: SS08B12, 5' end sequence, expressed in shoot stems.
FS952720.1:249-272
GAAATGAGAAGTTGAACATGAAATTTTAAT249TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
ZYta110 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159040.1:882-905
GAAATGAGAAGTTGAACATGAAATTTTAAT882TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG
PA_T348_TRA_5422 Camellia assamica PA1 cDNA library Camellia sinensis var. assamica cDNA 5', mRNA sequence.
HS391644.1:520-543
AGAAATGAGAAGTTGAGCATGAAATTTAAT520TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTGA
Tea031_2005-11-02_1/Tea031_H04_009_1 Camellia sinensis (tea) cultivar DT1 EST library Camellia sinensis cDNA, mRNA sequence.
JK479739.1:223-246
GAAATGAGAAGNTGAACATGAAATTTTAAT223TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGNNNNNNGNNNAANAAAA
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:1462-1485
GAAATGAGAAGTTGAACATGAAATTTTAAT1462TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
TSA: Camellia sinensis tea_rep_c1123 mRNA sequence.
KA280564.1:1896-1919
GAAATGGGAAGTTGAATATGAAATTTTAAT1896TTCTTTACCTTATGTATGTATGGAAT
TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:1431-1454
AGAAATGAGAAGTTGAACATGAAATTTTAA1431TTCTTTACCTTATGTATGTATGGAATTAGTGGTTG
Camellia irrawadiensis ICS1 mRNA for theobromine synthase, complete cds.
AB056108.1:1379-1402
GAAATGGGAAGTTGAACATGAAATTTTAAT1379TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAAAAAAAAAA
Camellia irrawadiensis ICS2 mRNA for theobromine synthase, complete cds.
AB207816.1:1316-1339
GAAATGAGAAGTTGAACATGAAATTTTAAT1316TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAAAGTCT
Camellia sinensis caffeine synthase 2 (TCS2) gene, complete cds.
JX647691.1:6471-6494
GAAATGAGAAGTTGAACATGAAATTTTAAT6471TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT
Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:6429-6452
GAAATGAGAAGTTGAACATGAAATTTTAAT6429TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTCCTAAAAATAACGTCT
Camellia sinensis caffeine synthase 6 (TCS6) pseudogene, complete sequence.
JX647695.1:5655-5678
AAATGAGAAGTTTGAACATGAAATTTTAAT5655TTCTTTACCTTATGTATGTATGGAATTAGTGGTTGTTTGCTAAAAATAACGTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCATACATACATAAGGTAAAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCATACATACATAAGGTAAAGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.286 | 0.278 | search_plus_done; http://172.18.8.135:50400/match?q=TCCATACATACATAAGGTAAAGAA&k=0&no_gap=0&offset=0&limit=50
0.957 | 0.671 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTTACCTTATGTATGTATGGA&k=0&no_gap=0&offset=0&limit=48
0.966 | 0.009 | cgi_end;

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