GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-10 06:19:37, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Porites australiensis mRNA, contig: Pau-assembly_38927.
FX474158.1:1340-1359
GTTGGTTGTTTGAGTTTCTCCCATTCAAGT1340TCGCAGAATTCGGAGAACTTGAATTGTTTTTAACTCCTTGTCTTTCCATG
Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
AP015034.1:48108507-48108526
GTGTAAGGTGGGGTGGTAGTATAAAAAGGG48108507TCGCAGAATTCGGAGAACTTTTCCATTTGCATCATCATTGCCATCACGTC
Longitarsus flavicornis genome assembly, chromosome: 9.
OZ177650.1:13654024-13654043
CGTATTAAAATTGACACTATAATTTCAAAT13654024TCGCAGAATTCGGAGAACTTGTGCGGTTTTTAATTAGGCAAGAGGAAGAG
Lissotriton helveticus genome assembly, chromosome: 1_1.
OZ180042.1:944626490-944626509
TTGCTGGTATTGATCTCAAGGCCACAGACA944626490TCGCAGAATTCGGAGAACTTATCCAATACATTTTGAAAACCCTGCAGTGT
UCRVU07_CCNP11437_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP11437.b1, mRNA sequence.
FG876703.1:295-314
GACGTGATGGCAATGATGATGCAGATGGAA295AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
UCRVU08_CCNS15510_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15510.b1, mRNA sequence.
FG898660.1:291-310
GACGTCATGGCAATGATGATGCAGATGGAA291AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Vigna angularis mRNA, clone: VES09H11.
HX945657.1:247-266
GACGTGATGGCAATGATGATGCAAATGGAA247AAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACAC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:25956694-25956713
GACGTCATGGCAATGATGATGCAGATGGAA25956694AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:25957879-25957898
GACGTCATGGCAATGATGATGCAGATGGAA25957879AAGTTCTCCGAATTCTGCGACCCTTTTTATTCTACCACCCCACCTTACAC
Vigna mungo isolate Urdbean chromosome 1.
CP144700.1:5007405-5007424
GACGTGATGGCAATGATGATGCAAATGGAA5007405AAGTTCTCCGAATTCTGCGACCCTTTTTATACTACCACCCCACCTTACAC
Porites lutea genome assembly, chromosome: 4.
OY283127.1:31518731-31518750
CATGGAGAGGCAAGGAGTTAAAAACAATTC31518731AAGTTCTCCGAATTCTGCGAACTTGAATGGGAGAAACTCAAACAACCAAC
Porites cylindrica genome assembly, chromosome: 4.
OZ037778.1:34613381-34613400
CATGGAAAGACAAGGAGTTAAAAACAATTC34613381AAGTTCTCCGAATTCTGCGAACTTGAATGGGAGAAACTCAAACAACCAAC
Porites divaricata genome assembly, chromosome: 4.
OZ038012.1:33387731-33387750
CATGGAGAGACAAGGAGTTAAAAGCAATTC33387731AAGTTCTCCGAATTCTGCGAACTTGAATGGGAGAAACTCAAACAACCAAC
Calymma communimacula genome assembly, chromosome: 3.
OZ239362.1:24283429-24283448
CACACACACACACAGATATGGTCGTACTGC24283429AAGTTCTCCGAATTCTGCGACGAGCGACGCGCGCAGCCTCCACCGGCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCGCAGAATTCGGAGAACTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCGCAGAATTCGGAGAACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.375 | 0.366 | search_plus_done; http://172.18.8.135:50900/match?q=TCGCAGAATTCGGAGAACTT&k=0&no_gap=0&offset=0&limit=50
0.773 | 0.397 | search_minus_done; http://172.18.8.135:50900/match?q=AAGTTCTCCGAATTCTGCGA&k=0&no_gap=0&offset=0&limit=46
0.780 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).