GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-05 13:17:12, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Manihot esculenta mRNA, clone: CAS01_004_L17, 3'end.
DB940021.1:332-358
TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGCCATCTT
Manihot esculenta mRNA, clone: CAS01_024_M20, 3'end.
DB946436.1:332-358
TGCTGCGCTCCACACGATGCCAAGTATCAT332TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta mRNA, clone: CAS01_032_K23, 3'end.
DB948942.1:330-356
TGCTGCGCTCCACACGATGCCAAGTATCAT330TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Quercus dentata isolate Qdleaves-2020 chromosome 1.
CP116444.1:31898887-31898913
TACTGCGCTCCACTCTATGCCACTTGTCGT31898887TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus variabilis isolate HB chromosome 1b.
CP129433.1:29822780-29822806
TACTGCGCTCCACTCTATGCCACTTGTCGT29822780TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus variabilis isolate HB chromosome 1a.
CP129445.1:31198641-31198667
TACTGCGCTCCACTCTATGCCACTTGTCGT31198641TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus robur genome assembly, chromosome: 1.
OW028765.1:28634895-28634921
TACTGCGCTCCACTCTATGCCACTTGTCGT28634895TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACTCTGTCATCTT
Quercus cerris genome assembly, chromosome: 6.
OY770011.1:30583035-30583061
TACTGCGCTCCACTCTATGCCACTTGTCGT30583035TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTTATCTGTAGCACCCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263161.1:10251195-10251221
TGCTGCGCTCCACACGATGCCAAGTATCAT10251195TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263179.1:9234584-9234610
TGCTGCGCTCCACACGATGCCAAGTATCAT9234584TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263197.1:10367632-10367658
TGCTGCGCTCCACACGATGCCAAGTATCAT10367632TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263215.1:10115491-10115517
TGCTGCGCTCCACACGATGCCAAGTATCAT10115491TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263233.1:9727923-9727949
TGCTTCGCTCCACACGATGCCAAGTATCAT9727923TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263233.1:9730487-9730513
TGCTGCGCTCCACACGATGCCAAGTATCAT9730487TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263251.1:10233903-10233929
TGCTGCGCTCCACACGATGCCAAGTATCAT10233903TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263269.1:10165371-10165397
TGCTGCGCTCCACACGATGCCAAGTATCAT10165371TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263307.1:10379957-10379983
TGCTGCGCTCCACACGATGCCAAGTATCAT10379957TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot glaziovii genome assembly, chromosome: 2.
OZ263325.1:11600707-11600733
TGCTTCGCTCCACACGATGCCAAGTATCAT11600707TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Manihot esculenta genome assembly, chromosome: 2.
OZ263343.1:10120174-10120200
TGCTGCGCTCCACACGATGCCAAGTATCAT10120174TCTTCTCTTCCTTCTCCACATTCCTCTCTCCGCTGATTTGGAGCACTCTGTCATCTT
Sequence 1070 from patent US 8937215.
HK371708.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 8937215.
HK371710.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 9574200.
KH564262.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 9574200.
KH564264.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 10227607.
MM771261.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 10227607.
MM771263.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 10883115.
MX197427.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 10883115.
MX197429.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1070 from patent US 11530418.
OO985938.1:352-378
AAGATGACAGAGTGCTCCAAATCAGCGGAG352AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Sequence 1072 from patent US 11530418.
OO985940.1:434-460
AAGATGACAGAGTGCTCCAAATCAGCGGAG434AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_004_L17, 5'end.
DB921378.1:353-379
AAGATGGCAGAGTGCTCCAAATCAGCGGAG353AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_024_M20, 5'end.
DB928617.1:350-376
AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Manihot esculenta mRNA, clone: CAS01_032_K23, 5'end.
DB931493.1:350-376
AAGATGACAGAGTGCTCCAAATCAGCGGAG350AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
CV01007B1A09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01007B1A09.f1, mRNA sequence.
DV442573.1:324-350
AAGATGACAGAGTGCTCCAAATCAGCGGAG324AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
CV02003B1A04.f1 CV02-normalized library Manihot esculenta cDNA clone CV02003B1A04.f1, mRNA sequence.
DV450142.1:297-323
AAGATGACAGAGTGCTCCAAATCAGCGGAG297AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_SX-PL011N01_A_plate34o22.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG983733.1:361-387
AAGATGACAGAGTGCTCCAAATCAGCGGAG361AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGAAGCA
U_UZ-100602_plate11e17.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991072.1:367-393
AAGATGACAGAGTGCTCCAAATCAGCGGAG367AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_UZ-100602_plate11o18.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991282.1:366-392
AAGATGACAGAGTGCTCCAAATCAGCGGAG366AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
U_UZ-100602_plate37p06.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG999532.1:311-337
AAGATGACAGAGTGCTCCAAATCAGCGGAG311AGAGGAATGTGGAGAAGGAAGAGAAGAATGATACTTGGCATCGTGTGGAGCGCAGCA
Castanea sativa cultivar Marrone di Chiusa Pesio chromosome 8.
CP151734.1:29769309-29769335
AAGATGACAGAGTGCTACAGATAAGCGTAG29769309AGAGGAATGTGGAGAAGGAAGAGAAGAACGACAAGTGGCATAGAGTGGAGCGCAGTA
Castanea sativa cultivar Marrone di Chiusa Pesio chromosome 8.
CP151746.1:29819799-29819825
AAGATGACAGAGTGCTACAGATAAGCGTAG29819799AGAGGAATGTGGAGAAGGAAGAGAAGAACGACAAGTGGCATAGAGTGGAGCGCAGTA
Quercus petraea genome assembly, chromosome: 6.
OZ066317.1:35540083-35540109
AAGATGACAGAGTGCTACAGATAAGCGGAG35540083AGAGGAATGTGGAGAAGGAAGAGAAGAACGACAAGTGGCATAGAGTGGAGCGCAGTA
Castanea sativa genome assembly, chromosome: 6.
OZ281361.1:29766192-29766218
AAGATGACAGAGTGCTACAGATAAGCGTAG29766192AGAGGAATGTGGAGAAGGAAGAGAAGAACGACAAGTGGCATAGAGTGGAGCGCAGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCTTCTCTTCCTTCTCCACATTCCTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCTCTTCCTTCTCCACATTCCTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50900/match?q=TCTTCTCTTCCTTCTCCACATTCCTCT&k=0&no_gap=0&offset=0&limit=50
1.274 | 1.070 | search_minus_done; http://172.18.8.135:50900/match?q=AGAGGAATGTGGAGAAGGAAGAGAAGA&k=0&no_gap=0&offset=0&limit=31
1.290 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).