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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:58:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:397347448-397347467
TGTAGCTTGAATACCCAGTAGCTCAGGATA397347448TGAAGGAAAAGGCTTCACCAAAGAAGGAGTGGTAGTGGCCCGGGGTACAG
Rhinatrema bivittatum genome assembly, chromosome: 3.
LR584389.1:342864414-342864433
GCCTGAAAGTGTCCTTGTGTAAATGTAACC342864414TGAAGGAAAAGGCTTCACCATTGCAGTCCCTGAAGCAATTCCTAGTTTAG
GH_TMIRS_076_H07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503714.1:203-222
ACCGCCTTATCTTCTTCATCATTCTGAAGA203TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
EST486 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 7-b11 5', mRNA sequence.
EE592884.1:105-124
ACCGCCTTATCTTCTTCATCATTCTGAAGA105TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
UFL_245_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES810960.1:649-668
ACCGCCTTATCTTCTTCATCATTCTGAAGA649TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
137C06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV488291.1:569-588
ACCGCCTTATCTTCTTCATCATTCTGAAGA569TGAAGGAAAAGGCTTCACCATTTTTGCCAGACATTTATGCCAAAAAAGAC
A06-GC8209 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805012.1:354-373
ACCGCCTTATCTTCTTCATCATTCTGAAGA354TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATAAAAGGCCTTCC
H01-GC7888 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810353.1:199-218
ACCGCCTTATCTTCTTCATCATTCTGAAGA199TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:55170037-55170056
ACCGCCTTATCTTCTTCATCATTCTGAAGA55170037TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:89555080-89555099
ACCGCCTTATCTTCTTCATCATTCTGAAGA89555080TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:144301249-144301268
ACCGCCTTATCTTCTTCATCATTCTGAAGA144301249TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACA
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:191407530-191407549
ACCGCCTTCTCTTCTTCATCATTCTGAAGA191407530TGAAGGAAAAGGCTTCACCATTTTTGCAAGAAATTTATGCAAAAAAGACG
Onychomys arenicola genome assembly, chromosome: 23.
OX460369.1:26558037-26558056
TGATCGATAGGTCACGCATGGAGCCACCTC26558037TGGTGAAGCCTTTTCCTTCAGAGAGAAGTAACCCATCCTGGAAAACTTCC
Onychomys arenicola genome assembly, chromosome: 23.
OX460464.1:25079948-25079967
TGATCGATAGGCCACGCATGGAGCCACCTC25079948TGGTGAAGCCTTTTCCTTCAGAGAGAAGTAACCCATCCTGGAAAACTTCC
GA__Ed0032G10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0032G10r, mRNA sequence.
BQ410635.1:373-392
TGTCTTTTTTGCATAAATTTCTTGCAAAAA373TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
GR__Eb0028C09.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0028C09 5', mRNA sequence.
CO101609.1:237-256
TGTCTTTTTTGCATAAATTTCTTGCAAAAA237TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
GR__Eb0031D23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0031D23 5', mRNA sequence.
CO103213.1:229-248
TGTCTTTTTTGCATAAATTTCTTGCAAAAA229TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
GR__Eb31D23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb31D23 5', mRNA sequence.
CO129819.1:229-248
TGTCTTTTTTGCATAAATTTCTTGCAAAAA229TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
COT_DT_E11 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_104028) ABC transporter family protein; protein id: At1g51500.1, mRNA sequence.
DT049972.1:346-365
TGTCTTTTTTGCATAAATTTCTTGCAAAAA346TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
H06_427262.90.S1104123241.anther-SP12186 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703818.1:340-359
TGTCTTTTTTGCATAAATTTCTTGCAAAAA340TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
B03_51707.15.S1108263237.LDYN1-10287.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111597.1:309-328
TGTCTTTTTTGCATAAATTTCTTGCAAAAA309TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
C09_51672.33.S1108253424.LDYN1-8961.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ113412.1:352-371
TGTCTTTTTTGCATAAATTTCTTGCAAAAA352TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
Gossypioides kirkii chromosome KI_05.
CP032247.1:4877798-4877817
TGTCTTTTTTGCATAAATTTCTTGCAAAAA4877798TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
Gossypium raimondii isolate D5-4 chromosome D5_05.
CP032557.1:5307741-5307760
TGTCTTTTTTGCATAAATTTCTTGCAAAAA5307741TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
Gossypium herbaceum isolate GPA1alz chromosome 5.
CP106702.1:6927627-6927646
TGTCTTTTTTGCATAAATTTCTTGCAAAAA6927627TGGTGAAGCCTTTTCCTTCATCTTCAGAATGATGAAGAAGATAAGGCGGT
Lineus longissimus genome assembly, chromosome: 12.
OU343003.1:15880378-15880397
CCTCTTCAAACTCGATTAAAAATCATAAAA15880378TGGTGAAGCCTTTTCCTTCAATGTGAGTGATTCTCCAATTCAAATAACGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAAGGAAAAGGCTTCACCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGGAAAAGGCTTCACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.575 | 0.566 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGGAAAAGGCTTCACCA&k=0&no_gap=0&offset=0&limit=50
1.118 | 0.543 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTGAAGCCTTTTCCTTCA&k=0&no_gap=0&offset=0&limit=38
1.128 | 0.009 | cgi_end;

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