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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:50:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST986736 FvF Fusarium verticillioides cDNA clone FVFIP55, mRNA sequence.
DR596608.1:599-618
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC599TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1040632 FvN Fusarium verticillioides cDNA clone FVNAU07, mRNA sequence.
DR650515.1:601-620
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC601TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070152 FvO Fusarium verticillioides cDNA clone FVOD194, mRNA sequence.
DR680035.1:616-635
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC616TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070873 FvO Fusarium verticillioides cDNA clone FVODK82, mRNA sequence.
DR680756.1:603-622
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC603TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070874 FvO Fusarium verticillioides cDNA clone FVODK82, mRNA sequence.
DR680757.1:603-622
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC603TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium oxysporum f. sp. koae isolate 44 chromosome 2.
CP052898.1:1335377-1335396
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1335377TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium verticillioides isolate ITEM 10027 chromosome 3.
CP079906.1:1413038-1413057
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC1413038TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium avenaceum strain WV21P1A chromosome 5.
CP109666.1:1348631-1348650
TCGCCATTGGGCTCGGGTGTGGCAGCAGCA1348631TGAGAAGCAGCCTCTCGTTGCATACGGGCCTCGATCTCGCGGAGCTGGGA
Fusarium oxysporum f. sp. cubense strain race 4 chromosome 2.
CP115876.1:1665887-1665906
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1665887TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium oxysporum strain Fo5176 chromosome 5.
CP128294.1:1397438-1397457
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1397438TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1003476 FvH Fusarium verticillioides cDNA clone FVHAS71, mRNA sequence.
DR613348.1:361-380
TCCCAGCTCCGAGAGATCGAGGCCCGCATG361CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1009515 FvH Fusarium verticillioides cDNA clone FVHDQ84, mRNA sequence.
DR619387.1:381-400
TCCCAGCTCCGAGAGATCGAGGCCCGCATG381CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1017949 FvI Fusarium verticillioides cDNA clone FVICJ07, mRNA sequence.
DR627821.1:79-98
TCCCAGCTCCGAGAGATCGAGGCCCGCATG79CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1040631 FvN Fusarium verticillioides cDNA clone FVNAU07, mRNA sequence.
DR650514.1:461-480
TCCCAGCTCCGAGAGATCGAGGCCCGCATG461CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1068961 FvO Fusarium verticillioides cDNA clone FVOCT94, mRNA sequence.
DR678844.1:281-300
TCCCAGCTCCGAGAGATCGAGGCCCGCATG281CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
TSA: Soil metagenome mRNA, contig: MTC02038.
FX002038.1:217-236
TCCCAGCTCCGCGAGATCGAGGCCCGTATG217CAACGAGAGGCTGCTTCTCATGCTGCTGCCACACCCGAGCCCAATGGCGA
Fusarium fujikuroi strain CSV1 chromosome II.
CP023078.1:3582127-3582146
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3582127CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium fujikuroi strain Augusto2 chromosome II.
CP023090.1:3571372-3571391
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3571372CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium fujikuroi strain I1.3 chromosome II.
CP023102.1:3628106-3628125
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3628106CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium oxysporum Fo47 chromosome IV.
CP052041.1:3333672-3333691
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3333672CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCTGAGCCCAATGGCGA
Fusarium verticillioides strain 7600 chromosome 2.
CP114042.1:3360502-3360521
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3360502CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
Fusarium proliferatum strain NRRL62905 chromosome 2.
CP128301.1:3375473-3375492
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3375473CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCTAATGGCGA
Fusarium oxysporum f. sp. vasinfectum isolate ME23 chromosome 5.
CP130301.1:3458128-3458147
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3458128CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCTGAGCCCAATGGCGA
Fusarium fujikuroi IMI 58289 draft genome, chromosome FFUJ_chr02.
HF679024.1:3593648-3593667
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3593648CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Scoparia ambigualis genome assembly, chromosome: 17.
OY992518.1:23820385-23820404
CGTGTCTATTCCCGTATATAGATCTATGGT23820385CAACGAGAGGCTGCTTCTCATACTGTTTGTGCTCTTCGTCATAAATGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGAAGCAGCCTCTCGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGAAGCAGCCTCTCGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.407 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAAGCAGCCTCTCGTTG&k=0&no_gap=0&offset=0&limit=50
0.772 | 0.365 | search_minus_done; http://172.18.8.135:50400/match?q=CAACGAGAGGCTGCTTCTCA&k=0&no_gap=0&offset=0&limit=40
0.782 | 0.010 | cgi_end;

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