GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 08:21:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB108J08R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB108J08, genomic survey sequence.
ED521199.1:871-890
CGTCACAACCCAAGAGTATTAATCGAAATC871ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTTGACCTCCGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:2605-2624
TCGTCACAACCAAGAGTATTAATCGAAATC2605ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:139954-139973
TCGTCACAACCAAGAGTATTAATCGAAATC139954ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH026E14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234743.1:100713-100732
TCGTCACAACCAAGAGTATTAATCGAAATC100713ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa genome, scaffold: A09.
LR031568.1:47544978-47544997
TCGTCACAACCAAGAGTATTAATCGAAATC47544978ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58011567-58011586
TCGTCACAACCAAGAGTATTAATCGAAATC58011567ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGCTGAACACCGAGGAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCTGAACACCGAGGAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCTGAACACCGAGGAAT&k=0&no_gap=0&offset=0&limit=50
0.384 | 0.121 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCCTCGGTGTTCAGCTCA&k=0&no_gap=0&offset=0&limit=50
0.388 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).