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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:07:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BN25.058E17F011029 BN25 Brassica napus cDNA clone BN25058E17, mRNA sequence.
CD824643.1:497-516
TTTGATCGGTGCTCACAACTTCACCCTAAT497TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
BNDH5DCT_UP_015_C04_26JAN2004_028 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727458.1:497-516
TTTGATCGGTGCTCACAACTTCACCCTAAT497TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAAATTTT
BNARO6GH_T3_015_B12_07DEC2006_094 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910085.1:453-472
TTTGATCGGTGCTCACAACTTCACCCTAAT453TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
0120919 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115607.1:342-361
TTTGATCGGTGCTCACAACTTCACCCTAAT342TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT
0120927 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115615.1:341-360
TTTGATCGGTGCTCACAACTTCACCCTAAT341TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24755772-24755791
TTTGATCGGTGCTCACAACTTCACCCTAAT24755772TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24896581-24896600
TTTGATCGGTGCTCACAACTTCACCCTAAT24896581TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48605255-48605274
TTTGATCGGTGCTCACAACTTCACCCTAAT48605255TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT
Brassica rapa genome, scaffold: A03.
LR031572.1:24384221-24384240
TTTGATCGGTGCTCACAACTTCACCCTAAT24384221TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51370977-51370996
TTTGATCGGTGCTCACAACTTCACCCTAAT51370977TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24512063-24512082
TTTGATCGGTGCTCACAACTTCACCCTAAT24512063TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT
Cardamine chenopodiifolia genome assembly, chromosome: 31.
OZ000489.1:10222678-10222697
TTTGATCGCTGCTCACAACTTCACCCAAAT10222678TGCTACTATTTAGAAACCTCAGGGACTGATTTTTCCGGCGAGAAACTATT
Troglohyphantes excavatus genome assembly, chromosome: 3.
OZ010668.1:64482150-64482169
TTATTTTTCACTTTGCATTATAGTTAGACT64482150TGCTACTATTTAGAAACCTCTTCAAAATTGTTTTAGTTGAACAAAACTGC
0120828 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115516.1:674-693
AACAGTTTCTCGCCGGAGAAATCAGTTCCT674GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
0120834 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115522.1:663-682
AACAGTTTCTCGCCGGAGAAATCAGTTCCT663GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
BR064550 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-038D06 5', mRNA sequence.
EX079906.1:469-488
AAAAGTTTCTCGCCGGAGAAATCAGTTCCT469GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
BR064621 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-039C06 5', mRNA sequence.
EX079977.1:455-474
AAAAGTTTCTCGCCGGAGAAATCAGTTCCT455GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
BR065153 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-046H05 5', mRNA sequence.
EX080509.1:500-519
AAAAGTTTCTCGCCGGAGAAATCAGTTCCT500GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
BR065964 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-060G08 5', mRNA sequence.
EX081320.1:436-455
AAAAGTTTCTCGCCGGAGAAATCAGTTCCT436GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:13661-13680
AAAAGTTTCTCGCCGGAGAAATCAGTTCCT13661GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7178716-7178735
AACAGTTTCTCGCCGGAGAAATCAGTTCCT7178716GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:8820691-8820710
AAGCGTTTCTCGCCGGAAAAATCAATCCCT8820691GAGGTTTCTAAATAGTAGCAATTTGGGTGAAGTTGTGAGCAGCGATCAAA
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:7725020-7725039
AACCGTTTCTCGCCGGAAAAATCAGTCCCT7725020GAGGTTTCTAAATAGTAGCAATTTGGGTGAAGGTGTGAGCAGCGATCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTACTATTTAGAAACCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTACTATTTAGAAACCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.399 | 0.390 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTACTATTTAGAAACCTC&k=0&no_gap=0&offset=0&limit=50
0.905 | 0.506 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTTTCTAAATAGTAGCA&k=0&no_gap=0&offset=0&limit=37
0.912 | 0.007 | cgi_end;

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