GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:06:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:262639108-262639129
GATTCCATAAGCTGCAAATTTCTGGAGGTA262639108TGTCTAAATTCTCATGGCAGTGCAATGATATGTCTAAATTCTCATGGCAGTG
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:262639138-262639159
TGTCTAAATTCTCATGGCAGTGCAATGATA262639138TGTCTAAATTCTCATGGCAGTGCAATGATAGGTACCTCAACCAGATGAGGCT
KS01064E06 KS01 Capsicum annuum cDNA, mRNA sequence.
BM064219.1:663-684
AGCCTCATCTGGTTGAGGTACCTATCATTG663CACTGCCATGAGAATTTAGACATAC
KS20013B03 KS20 Capsicum annuum cDNA, mRNA sequence.
GD094485.1:581-602
AGCCTCATCTGGTTGAGGTACCTATCATTG581CACTGCCATGAGAATTTAGACATACCTCCAGAAATTTGCAGCTTATGGAATC
TSA: Capsicum annuum CM_MegaContig_38928 mRNA sequence.
JW107153.1:196-217
AGCCTCATCTGGTTGAGGTACCTATCATTG196CACTGCCATGAGAATTTAGACATATCATTGCACTGCCATGAGAATTTAGACA
TSA: Capsicum annuum CM_MegaContig_38928 mRNA sequence.
JW107153.1:226-247
CACTGCCATGAGAATTTAGACATATCATTG226CACTGCCATGAGAATTTAGACATACCTCCAGAAATTTGCAGCTTATGGAATC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:3760506-3760527
AGCCTCATCTGGTTGAGGTACCTATCATTG3760506CACTGCCATGAGAATTTAGACATACCTCCAGAAATTTGCAGCTTATGGAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTCTAAATTCTCATGGCAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCTAAATTCTCATGGCAGTG | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCTAAATTCTCATGGCAGTG&k=0&no_gap=0&offset=0&limit=50
0.412 | 0.230 | search_minus_done; http://172.18.8.135:50400/match?q=CACTGCCATGAGAATTTAGACA&k=0&no_gap=0&offset=0&limit=48
0.416 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).