GGGenome | Results

Help | Japanese

2025-04-06 21:22:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GF-FV-P3C3 Marsh grapefruit young flavedo Citrus x paradisi cDNA, mRNA sequence.
BE208883.1:50-69

CAACGCCGCTAACAAAACAAATACAAATCT50TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

Citrus unshiu cDNA, clone: pcMFRI616.34, 5'-end sequence.
C23883.1:45-64

GAGCAACGCTAACAAAACAAATATAAATCT45TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

UCRCS01_02db10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02db10, mRNA sequence.
CB291369.1:64-83

CAACGCCGCTAACAAAACAAATACAAATCT64TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

UCRCS01_05df03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df03, mRNA sequence.
CB293309.1:59-78

CAACGCCGCTAACAACACAAATACAAATCT59TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

USDA-FP_6471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H08 5', mRNA sequence.
CK740327.1:56-75

TAACAACGCTAACAAAACAAATACAAATCT56TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

CGF1004520_C03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C03 5', mRNA sequence.
CK936611.1:71-90

CAACGCCGCTAACAAAACAAATACAAATCT71TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

CGF1004520_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_B09 5', mRNA sequence.
CK936628.1:66-85

CAACGCCGCTAACAAAACAAATACAAATCT66TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

CGF1004476_B02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IIF_B02 5', mRNA sequence.
CK938253.1:65-84

NAACGCCGCTAACAAAACAAATACAAATCT65TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

Citrus unshiu mRNA, clone: MFI6G34, 5'-end sequence, expressed in juice sac.
DC893414.1:38-57

AGCAACGCTGAACAAAACAAATATAAATCT38TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

Citrus unshiu mRNA, clone: MFI6G34, 5'-end sequence, expressed in juice sac.
DC893414.1:559-578

GAGCAACGCTAACAAAACAAATATAAATCT559TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

USDA-FP/ARO_15144 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-22_G11 5', mRNA sequence.
DN959314.1:42-61

CAACAACGCTAACAAAACAAATATAAATCT42TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

KN0AAL3DA09FM1 KCl-Salt1 Citrus reshni cDNA 5', mRNA sequence.
DY306812.1:48-67

TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

Volcani_8_10_F2 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX447630.1:85-104

TAACGCCGCTAACAAAACAAGTACAAATCT85TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTCCAAACAA

CS00-C1-101-030-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY661221.1:74-93

CAACGCCGCTAACAAAACAAATACAAATCT74TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

CS00-C5-003-035-A12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY746552.1:48-67

TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAACAAT

CS00-C5-003-054-E06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY748181.1:48-67

CCTTAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

KN0AAL3DA09FM1 KCl_Salt1 Citrus reshni cDNA clone KN0AAL3DA09, mRNA sequence.
FC918978.1:48-67

TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA

UCRCS01_02db10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02db10, mRNA sequence.
CB291368.1:430-449

TTGTTTGAAAGAAATGAAAGGGGAATCAAT430TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGGCGTTG

UCRCS01_05df03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df03, mRNA sequence.
CB293308.1:467-486

TTGTTTGAAAGAAATGAAAGGGGAATCAAT467TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGGCGTTG

Citrus unshiu mRNA, clone: RGP0175, 5'-end sequence, expressed in root.
DC896431.1:482-501

TTGTTTGAAAGAAATGAAAGGGGAATCAAT482TCGTTTAAGCTCGCTCAACAAGATTTATATTTGTTTTGTTAGCGTTGTTG

IC0AAA96AA05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY298597.1:618-637

TTGTTTGAAAGAAATGAAAGGGGAATCAAT618TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA

IC0AAA96AA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96AA05, mRNA sequence.
FC912579.1:618-637

TTGTTTGAAAGAAATGAAAGGGGAATCAAT618TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA

Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:16224607-16224626

TTGTTTGAAAGAAATGAAAGGGGAATCAAT16224607TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.804 | 0.795 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAGCGAGCTTAAACGA&k=0&no_gap=0&offset=0&limit=50
1.043 | 0.240 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTTTAAGCTCGCTCAACA&k=0&no_gap=0&offset=0&limit=33
1.047 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).