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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:22:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:39848113-39848132
CGGTGGTTGTGCGCTCGGATCAAACCTTTC39848113TTCACTGGAATGTCCGTTCACATTGCTACGCTGGTCCATAGCGACAACCA
RS1AM64TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715529.1:144-163
TGGTTGTCGCTATGGACCAGCGTAGCAATG144TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS1AX57TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW717183.1:144-163
TGGTTGTCGCTATGGACCAGCGTAGCAATG144TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS2B570TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW724946.1:138-157
TGGTTGTCGCTATGGACCAGCGTAGCAATG138TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS2BW42TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX895588.1:138-157
TGGTTGTCGCTATGGACCAGCGTAGCAATG138TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS3CG54TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905121.1:138-157
TGGTTGTCGCTATAGACCAGCGTAGCAATG138TGAACGGACATTCCAGTGAAGAAAGGTTTGACCCGAGCGCACAACCACCG
RR1D004TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY896670.1:140-159
TGGTTGTCGCTATGGACCAGCGTAGCAATG140TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RR4DQ47TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923400.1:146-165
TGGTTGTCGCTATGGACCAGCGTAGCAATG146TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RR4FJ46TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD559440.1:41-60
TGGTTGTCGCTATGGACCAGCGTAGCAATG41TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS1FJ64TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD564055.1:81-100
TGGTTGTCGCTATGGACCAGCGTAGCAATG81TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS3EY93TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD578232.1:142-161
TGGTTGTCGCTATGGACCAGCGTAGCAATG142TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS2H180TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948702.1:138-157
TGGTTGTCGCTATGGACCAGCATAGCAATG138TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
RS2H909TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD949330.1:137-156
TGGTTGTCGCTATGGACCAGCGTAGCAATG137TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCF02G13, 5' end sequence.
FY428418.1:114-133
TGGTTGTCGCTATGGACCAGCGTAGCAATG114TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCF08J16, 5' end sequence.
FY430011.1:101-120
TGGTTGTCGCTATGGACCAGCGTAGCAATG101TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCF09F13, 5' end sequence.
FY430200.1:105-124
TGGTTGTCGCTATGGACCAGCGTAGCAATG105TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCF11L04, 5' end sequence.
FY430796.1:97-116
TGGTTGTCGCTATGGACCAGCGTAGCAATG97TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCF20I09, 5' end sequence.
FY433037.1:101-120
TGGTTGTCGCTATGGACCAGCGTAGCAATG101TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCR12F05, 5' end sequence.
FY443492.1:97-116
TGGTTGTCGCTATGGACCAGCGTAGCAATG97TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCS14D07, 5' end sequence.
FY450797.1:107-126
TGGTTGTCGCTATGGACCAGCGTAGCAATG107TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCS16C09, 5' end sequence.
FY451483.1:98-117
TGGTTGTCGCTATGGACCAGCGTAGCAATG98TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCS16D05, 5' end sequence.
FY451501.1:84-103
TGGTTGTCGCTATGGACCAGCGTAGCAATG84TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCS17H13, 5' end sequence.
FY451963.1:100-119
TGGTTGTCGCTATGGACCAGCGTAGCAATG100TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus mRNA, clone: RSCS18N08, 5' end sequence.
FY452452.1:99-118
TGGTTGTCGCTATGGACCAGCGTAGCAATG99TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_4992.
FX660111.1:62-81
TGGTTGTCGCTATGGACCAGCGTAGCAATG62TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
TSA: Raphanus sativus RS16316 mRNA sequence.
JT800863.1:99-118
TGGTTGTCGCTATGGACCAGCGTAGCAATG99TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus var. sativus omega-3 fatty acid desaturase 3-1 type (FAD 3) mRNA, complete cds.
KT946986.1:32-51
TGGTTGTTGCTATGGACCAGCGTAGCAATG32TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:13802388-13802407
TGGTTGTCGCTATGGACCAGCGTAGCAATG13802388TGAACGGACATTCCAGTGAAGAAAGGTTTGATCCGAGCGCACAACCACCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCACTGGAATGTCCGTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCACTGGAATGTCCGTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=TTCACTGGAATGTCCGTTCA&k=0&no_gap=0&offset=0&limit=50
1.954 | 1.691 | search_minus_done; http://172.18.8.135:50400/match?q=TGAACGGACATTCCAGTGAA&k=0&no_gap=0&offset=0&limit=49
1.971 | 0.017 | cgi_end;

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