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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:46:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene52839_XinShao mRNA sequence.
JR642479.1:1270-1292
AATGTTGGGTGGAGTGTTTGTCATGCTCGT1270TTCCTGCCCAAGAGGTATCATAATTTCAGAAAATGTTGCACTATGATGATCGA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:27010043-27010065
ATTGTTAGGTGGAGTGTTTGTCATGCTGTT27010043TTCCTGCCCAAGAGGTATCATAATTGCAGAAAATGTTGCACTATGATGATCAA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH036_08138m, 5' end sequence.
AB450716.1:150-172
TATTTCATCATAGTGCAACATTTTCTGAAA150TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
020806AVBC012449HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012449, mRNA sequence.
CN948450.1:127-149
TCGATCATCATAGTGCAACATTTTCTGAAA127TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Pyrus pyrifolia mRNA, clone: NFR1_19_38, 5' end sequence, expressed in fruit.
HX747206.1:35-57
TATTTCATCATAGTGCAACATTTTCTGAAA35TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
TSA: Pyrus x bretschneideri Unigene72557_XinShao mRNA sequence.
JR658597.1:1-23
1TTATGATACCTCTTGGGCAGGAAAACAGCATGACAAACACTTCACCAAACAAT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3126483-3126505
TCGATCATCATAGTGCAACATTTTCTGAAA3126483TTATGATACCTCTTGGGCAGGAAACGAGCATGACTAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3488001-3488023
TCGATCATCATAGTGCAACATTTTCTGAAA3488001TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3272171-3272193
TCGATCATCATAGTGCAACATTTTCTGAAA3272171TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:3792131-3792153
TCGATCATCATAGTGCAACATTTTCTGAAA3792131TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3514359-3514381
TCGATCATCATAGTGCAACATTTTCTGAAA3514359TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3313483-3313505
TCGATCATCATAGTGCAACATTTTCTGAAA3313483TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3533651-3533673
TCGATCATCATAGTGCAACATTTTCTGAAA3533651TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3536648-3536670
TCGATCATCATAGTGCAACATTTTCTGAAA3536648TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3501443-3501465
TCGATCATCATAGTGCAACATTTTCTGAAA3501443TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3538348-3538370
TCGATCATCATAGTGCAACATTTTCTGAAA3538348TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3905035-3905057
TCGATCATCATAGTGCAACATTTTCTGAAA3905035TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:2884845-2884867
TCGATCATTATAGTGCAACATTTTCTGAAA2884845TTATGATACCTCTTGGGCAGGAAACGAGCATGACAAACACTCCACCCAACATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCCTGCCCAAGAGGTATCATAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCCTGCCCAAGAGGTATCATAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TTCCTGCCCAAGAGGTATCATAA&k=0&no_gap=0&offset=0&limit=50
0.298 | 0.182 | search_minus_done; http://172.18.8.135:50400/match?q=TTATGATACCTCTTGGGCAGGAA&k=0&no_gap=0&offset=0&limit=48
0.309 | 0.011 | cgi_end;

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