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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:39:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Citrus unshiu mRNA, clone: MAPEM46, 5' end, expressed in albedo.
AU300560.1:744-763
AGAACCGAAAATCCCAGAGGAGGAAGAAGA744TTCTTTGGAGCCGAACAACTCGTTCGTCAATGAAGAAGAGGAACCTGTTT
UCRCS01_02cb08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02cb08, mRNA sequence.
CB291207.1:805-824
AGAACCGAAAATCCCAGAGGAGGAAGAAGA805TTCTTTGGAGCCGAACAACTCGTTCGTCAATGAAGAAGAGGAACCTGTTT
C18015E02Rv Drought2 Citrus reshni cDNA clone C18015E02, mRNA sequence.
CX306219.1:433-452
AGAACCGAAAATCCCAGAGGAGGAAGAAGA433TTCTTTGGAGCCGAACAACTCGTTCGTCAATGAAGAAGAGGAACCTGTTT
Sambucus nigra genome assembly, chromosome: 17.
OX422223.1:148472373-148472392
CAACCAATACAGTACAGTGGGCGTAGTCTA148472373TTCTTTGGAGCCGAACAACTTAAATTTTTTTTTGTGTCTTATTTGTTTAA
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:10018805-10018824
AGAACCGAAAATCCCAGAGGAGGAAGAAGA10018805TTCTTTGGAGCCGAACAACTCGTTCGTCAATGAAGAAGAGGAACCTGTTT
UCRCS11_01M02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M02, mRNA sequence.
DN617837.1:321-340
AAACAGGTTCCTCTTCTTCATTGACGAACG321AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
UCRCA01_03D13_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0003D13, mRNA sequence.
DN623232.1:322-341
AAACAGGTTCCTCTTCTTCATTGACGAACG322AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
USDA-FP/ARO_13659 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-04_A03 5', mRNA sequence.
DN957829.1:68-87
AAACAGGTTCCTCTTCTTCATTGACGAACG68AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
USDA-FP/ARO_14830 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-18_G10 5', mRNA sequence.
DN959000.1:28-47
CAGGTTCCTCTTCTTCATTGACGAACG28AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
USDA-FP/ARO_15524 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-27_F09 5', mRNA sequence.
DN959694.1:52-71
AAACAGGTTCCTCTTCTTCATTGACGAACG52AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
IC0AAA42CA01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276930.1:511-530
AAACAGGTTCCTCTTCTTCATTGACGAACG511AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
CS00-C3-700-012-H06-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY701822.1:201-220
AAACAGGTTCCTCTTCTTCATTGACGAACG201AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
CS00-C3-705-023-G03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY737033.1:264-283
AAACAGGTTCCTCTTCTTCATTGACGAACG264AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
CR05-C3-701-097-E12-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY800485.1:229-248
AAACAGGTTCCTCTTCTTCATTGACGAACG229AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGGTGT
PT11-C1-900-027-H03-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, mRNA sequence.
EY812575.1:308-327
AAACAGGTTCCTCTTCTTCATTGACGAACG308AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
PT11-C1-901-056-E02-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY823844.1:300-319
AAACAGGTTCCTCTTCTTCATTGACGAACG300AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT
IC0AAA42CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CA01, mRNA sequence.
FC914810.1:511-530
AAACAGGTTCCTCTTCTTCATTGACGAACG511AGTTGTTCGGCTCCAAAGAATCTTCTTCCTCCTCTGGGATTTTCGGTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTTGGAGCCGAACAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTTGGAGCCGAACAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTTGGAGCCGAACAACT&k=0&no_gap=0&offset=0&limit=50
1.358 | 1.136 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTGTTCGGCTCCAAAGAA&k=0&no_gap=0&offset=0&limit=45
1.366 | 0.008 | cgi_end;

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