GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:14:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Carassius carassius genome assembly, chromosome: 41.
OY720508.1:22837553-22837572
ATATTGAAGTATTCTTTGGGCTTCGGATCA22837553TTGGTTGAGGCAAGTTTTCAAAACAGCTTATCAGTCTGCCTAATGTAAAA
Agrotis clavis genome assembly, chromosome: 4.
OX940921.1:17335613-17335632
AGCTCCTTTTTATTATTTGAAAACTTCTCC17335613TTGGTTGAGGCAAGTTTTCAAATAATGAGGAAGGTTTCAAGTGATAAAGA
Pyrausta despicata genome assembly, chromosome: 7.
OY992851.1:5151447-5151466
CCTTGTGATACTTGGGGTGTGCGATGGCGC5151447TTGGTTGAGGCAAGTTTTCAACAGTGCTATGCATACCTTCGTATCGGATT
Cyprinus carpio genome assembly, scaffold: LG20, chromosome: 20.
LN590713.1:1682231-1682250
TTTTACATTCGGCAGACTGATTAGCGGTTT1682231TGAAAACTTGCCTCAACCAATGATCCGAAGCCCAAAGAATACTTCAATTT
Cyprinus carpio genome assembly, scaffold: LG20, chromosome: 20.
LN590713.1:1862519-1862538
TTTTACATTCGGCAGACTGATTAGCGGTTT1862519TGAAAACTTGCCTCAACCAATGATCCGAAGCCCAAAGAATACTTCAATTT
Xanthogramma pedissequum genome assembly, chromosome: 1.
OU343160.1:36900942-36900961
CAACTCTATTTATAATATATGATATAATTG36900942TGAAAACTTGCCTCAACCAAACCACATAACTTGCTACTCTGTCGCGTCAC
Xylophagus ater genome assembly, chromosome: 5.
OY730482.1:27074938-27074957
AAATTGCCTGAAAATTTCATAATAATTGCT27074938TGAAAACTTGCCTCAACCAAAAGGCGTCATCTTTCTTCTGTGAGATTCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGTTGAGGCAAGTTTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGTTGAGGCAAGTTTTCA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.310 | 0.301 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGTTGAGGCAAGTTTTCA&k=0&no_gap=0&offset=0&limit=50
0.417 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAAACTTGCCTCAACCAA&k=0&no_gap=0&offset=0&limit=47
0.419 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).