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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 02:53:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Schima mertensiana mRNA, contig: Sm_rep_c5091.
FX150668.1:634-653
GATATAATTAGCCAGCAATCTTTGGTTTTG634TTGTGCTTAGCGACCTCTTCAAATAGGTGGACTTTCGGATCTGAAGCCAT
TSA: Camellia sinensis tea_rep_c3447 mRNA sequence.
KA282870.1:563-582
GCTATAATTAGCCAGCAATCTTTGGTTTTG563TTGTGCTTAGCGACCTCTTCAAACAGGTGAACTTTCGGATCTGAAGCCAT
Cenchrus purpureus cultivar elephant grass chromosome B6.
CP053466.1:124594377-124594396
GTAGCAGGCTGCTGGGTGGGTTGCTCGGGG124594377TTGTGCTTAGCGACCTCTTCCCGGATGGGGGAGAGATGGCTGCGCGGAGG
Camellia sinensis mRNA, clone: RT20H05, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS949339.1:147-166
ATGGCTTCAGATCCGAAAATTCACACATTT147GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC
Camellia sinensis mRNA, clone: RT7G11, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951913.1:134-153
TGCAGTTGCAGTGAAAAAATGGCTTCAGTT134GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC
Camellia sinensis mRNA, clone: SS02F10, 5' end sequence, expressed in shoot stems.
FS952347.1:156-175
ATGGCTTCAGATCCGAAAATTCACACATTT156GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTGTC
Camellia sinensis mRNA, clone: SS10H05, 5' end sequence, expressed in shoot stems.
FS952914.1:146-165
ATGGCTTCAGATCCGAAAATTCACACATTT146GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC
Camellia sinensis mRNA, clone: SS17C07, 5' end sequence, expressed in shoot stems.
FS953377.1:149-168
ATGGCTTCAGATCCGAAAATTCACACATTT149GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTACTGGCTAATTTTATC
Camellia sinensis mRNA, clone: SS22E02, 5' end sequence, expressed in shoot stems.
FS953743.1:154-173
ATGGCTTCAGATCCGAAAATTCACACATTT154GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTGTC
EST1067 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_58.M13+_B08.ab1, mRNA sequence.
GE650740.1:143-162
ATGGCTTCAGATCCGAAAGTTCACCTGTTT143GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC
EST2180 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_23_29.M13+_E04.ab1, mRNA sequence.
GE651853.1:145-164
ATGGCTTCAGATCCGAAAGTTCACCTGTTT145GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC
EST2376 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_06.M13+_F01.ab1, mRNA sequence.
GE652049.1:137-156
ATGGCTTCAGATCCGAAAGTTCACCTGTTT137GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC
Tea215_2006-02-14_1/Tea215_G11_042_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476320.1:150-169
ATGGCTTCAGATCCGAAAATTCACACATTT150GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC
TSA: Schima mertensiana mRNA, contig: Sm_rep_c4184.
FX149761.1:88-107
ATGGCTTCAGATCCGAAAATTCACACATTT88GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAGTGATATC
TSA: Camellia sinensis tea_rep_c8259 mRNA sequence.
KA287635.1:118-137
ATGGCTTCAGATCCGAAAATTCACACATTT118GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC
TSA: Camellia sinensis tea_rep_c24886 mRNA sequence.
KA303218.1:76-95
AWGGCTTCAGATCCGAAAGTTCACCTGTTT76GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTATAGC
Camellia sinensis clone U10BCDNA 0132 cytochrome b5 mRNA, complete cds; chloroplast.
HM003297.1:147-166
ATGGCTTCAGATCCGAAAATTCACACATTT147GAAGAGGTCGCTAAGCACAACAAAACCAAAGATTGCTGGCTAATTTTATC
Pichia sorbitophila strain CBS 7064 chromosome D complete sequence.
FO082056.1:348162-348181
TCCACCGAACAATTGAGGACCATCACCGAA348162GAAGAGGTCGCTAAGCACAACACGTCGTCAGACTTGTGGGTTGTGTACAA
Pichia sorbitophila strain CBS 7064 chromosome C complete sequence.
FO082057.1:340269-340288
TCCACCGAACAGTTGAAGACCATCACCGAA340269GAAGAGGTCGCTAAGCACAACACGACGTCAGACTTGTGGGTTGTGTACAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTGCTTAGCGACCTCTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGCTTAGCGACCTCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.361 | 0.353 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGCTTAGCGACCTCTTC&k=0&no_gap=0&offset=0&limit=50
1.216 | 0.855 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAGGTCGCTAAGCACAA&k=0&no_gap=0&offset=0&limit=47
1.227 | 0.010 | cgi_end;

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