GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

011010AVBC127026PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC127026, mRNA sequence.
CN945508.1:42-65

GCTTCAGGCAATCATTTCTCTGAAACATAT42TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGAAGGACAAGCAAGGGC

TSA: Pyrus x bretschneideri Unigene31479_XinShao mRNA sequence.
JR624385.1:349-372

GCTTCAGGCAATCATTTCTCTGAAACATAT349TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGAAGGACAAGCAAGGGC

Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:1578078-1578101

CTATGTTTGGTTGATTTCAAATACAGATAT1578078TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:2209697-2209720

TCATGTTTGGTTGATTTCAAATACAGATAT2209697TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA

Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:1620400-1620423

CTATGTTTGGTTGATTTCAAATACAGATAT1620400TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:3088504-3088527

TCATGTTTGGTTGATTTCAAATACAGATAT3088504TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCT

Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:1626405-1626428

CTATGTTTGGTTGATTTCAAATACAGATAT1626405TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:2315395-2315418

TCATGTTTGGTTGATTTCAAATACAGATAT2315395TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA

Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:1693200-1693223

CTATGTTTGGTTGATTTCAAATACAGATAT1693200TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT

Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:2244611-2244634

TCATGTTTGGTTGATTTCAAATACAGATAT2244611TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA

Malus x robusta genome assembly, chromosome: 1.
OY720325.1:2085916-2085939

TCATGTTTGGTTGATTTCAAATACAGATAT2085916TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA

Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:2627212-2627235

TCATGTTTGGTTGATTTCAAATACAGATAT2627212TTTAACAGCAGCACAGGCAGTTTACCAGAATCCTAATGTTAGTGGCCACCATCA

Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:29772286-29772309

AGATGACGGCCACTAACATTATGATTCTGG29772286TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:53777748-53777771

AGATGATGACCACTAACATTATGATTCTGG53777748TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:30809030-30809053

AGATGACGGCCACTAACATTATGATTCTGG30809030TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:47325894-47325917

TGATGATGACCACTAACATTATGATTCTGG47325894TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:28711178-28711201

AGATGACGGCCACTAACATTATGATTCTGG28711178TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:51904636-51904659

AGATGATGACCACTAACATTATGATTCTGG51904636TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus domestica genome assembly, chromosome: 8.
OU696684.1:28464009-28464032

AGATGACGGCCACTAACATTATGATTCTGG28464009TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus domestica genome assembly, chromosome: 15.
OU696691.1:53592756-53592779

AGATGATGACCACTAACATTATGATTCTGG53592756TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus domestica genome assembly, chromosome: 8.
OU744549.1:28971597-28971620

AGATGACGGCCACTAACATTATGATTCTGG28971597TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus domestica genome assembly, chromosome: 15.
OU744556.1:53333830-53333853

AGATGATGACCACTAACATTATGATTCTGG53333830TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus domestica genome assembly, chromosome: 8.
OU744960.1:28769783-28769806

AGATGACGGCCACTAACATTATGATTCTGG28769783TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus domestica genome assembly, chromosome: 15.
OU744967.1:53900882-53900905

AGATGATGACCACTAACATTATGATTCTGG53900882TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus domestica genome assembly, chromosome: 8.
OU744998.1:29674418-29674441

AGATGACGGCCACTAACATTATGATTCTGG29674418TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Malus domestica genome assembly, chromosome: 15.
OU745005.1:52927697-52927720

AGATGATGACCACTAACATTATGATTCTGG52927697TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Malus x robusta genome assembly, chromosome: 16.
OY720340.1:29005459-29005482

AGATGACGGCCACTAACATTATGATTCTGG29005459TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG

Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:33909804-33909827

AGATGACAGCCACTAACATTATGATTCTGG33909804TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA

Pyrus communis genome assembly, chromosome: 1.
OY757068.1:41937180-41937203

GATGAATGGCCACTAACATTATGATTCTGG41937180TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA

Pyrus communis genome assembly, chromosome: 15.
OY757082.1:23080713-23080736

AGATGACAGCCACTAACATTATGATTCTGG23080713TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA

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Debug Info:

0.009 | 0.009 | search_start;
0.149 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=TTTAACAGCAGCACAGGCAGTTTA&k=0&no_gap=0&offset=0&limit=50
0.190 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=TAAACTGCCTGTGCTGCTGTTAAA&k=0&no_gap=0&offset=0&limit=38
0.202 | 0.011 | cgi_end;

Summary:

Results:

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