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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys dimidiatus genome assembly, chromosome: 7.
OU015380.1:73472338-73472357
TTCCTGCTTACTGGAGTCTTCCCTGTGGGT73472338TTTACGCTGAGGATCTGCCTGTTGTGAGTGCTCAGGCCCCAAGGAGGGGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_8387.
FX703417.1:2113-2132
GGAAAAGAACTCCATCTCTAGATTGTTCTT2113TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA
KBrH099P11R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH099P11, genomic survey sequence.
DU125087.1:706-725
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT706TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA
KBrH098P11R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH098P11, genomic survey sequence.
DU126467.1:607-626
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT607TTTACGCTGAGGATCTGCCTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB014C24, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189234.2:2143-2162
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT2143TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB064L06, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234722.1:25520-25539
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT25520TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCTGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012N11, complete sequence.
AC189588.2:108647-108666
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT108647TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:1744081-1744100
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT1744081TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:1794822-1794841
ACAAGGGAAAGGAAGTAAAGTCTTCACCTT1794822TTTACGCTGAGGATCTGCCTGCATCATGATCGTATCAGATTTGATCGAAA
BR003191 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-017E12 5', mRNA sequence.
EX018547.1:363-382
TTCAGATCAAATCTGATACGATCATGATGC363AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC
BR050160 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-18B05 5', mRNA sequence.
EX065516.1:264-283
TTCAGATCAAATCTGATACGATCATGATGC264AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC
BR115107 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-102C05 5', mRNA sequence.
EX131277.1:84-103
TTCAGATCAAATCTGATACGATCATGATGC84AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCC
BNAPO2GH_T3_023_G09_20JUN2007_067 BNAPO2GH Brassica napus cDNA 5', mRNA sequence.
GR454968.1:353-372
TTTCGATCAAATCTGATACGATCATGATGC353AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCA
BNAPO4GH_T3_006_H01_20JULY2007_001 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459136.1:341-360
TTTCGATCAAATCTGATACGATCATGATGC341AGGCAGATCCTCAGCGTAAAAAGAACAATCTAGAGATGGAGTTCTTTTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTACGCTGAGGATCTGCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTACGCTGAGGATCTGCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.269 | 0.260 | search_plus_done; http://172.18.8.135:50400/match?q=TTTACGCTGAGGATCTGCCT&k=0&no_gap=0&offset=0&limit=50
0.840 | 0.572 | search_minus_done; http://172.18.8.135:50400/match?q=AGGCAGATCCTCAGCGTAAA&k=0&no_gap=0&offset=0&limit=41
0.844 | 0.004 | cgi_end;

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