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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 07:19:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB028P15F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028P15, genomic survey sequence.
DX031988.1:643-662
TACGAAAGCTCAGGATCCTCAGAGTACGAA643TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
KBrB117O19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB117O19, genomic survey sequence.
ED528000.1:665-684
TACGAAAGCTCAGGATCCTCAGAGTACGAA665TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:13349099-13349118
TACGAAAGCTCAGGATCCTCAGAGTACGAA13349099TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019A15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC189249.1:128658-128677
ATGAGATCAGTGAAGTCATCAAACTTTGAG128658GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB074G23, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189460.2:1584-1603
ATGAGATCAGTGAAGTCATCAAACTTTGAG1584GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:13095401-13095420
ATGAGATCAGTGAAGTCATCAAACTTTGAG13095401GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTATAGGCTTGGAAGCAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATAGGCTTGGAAGCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.383 | 0.374 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATAGGCTTGGAAGCAAC&k=0&no_gap=0&offset=0&limit=50
0.503 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGCTTCCAAGCCTATAAA&k=0&no_gap=0&offset=0&limit=47
0.505 | 0.002 | cgi_end;

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