GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-06 14:01:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:39421803-39421822
TTCATTGGAGATATAAGAAGTGGATGCAAG39421803TTTCTCATGTGCAAGGTCCATCGAGTTTTATGCTGGTAAGTAGACTTTTG
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:43983148-43983167
TTCATTGGAGATATAAGAAGTGGATGCAAG43983148TTTCTCATGTGCAAGGTCCATCGAGTTTTATGCTGGTAAGTAGACTTTTG
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:5233827-5233846
CAAAAGTCTACTTACCAGCATAAAACTCGA5233827TGGACCTTGCACATGAGAAACTTGCATCCACTTCTTATATCTCCAATGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:5200133-5200152
CAAAAGTCTACTTACCAGCATAAAACTCGA5200133TGGACCTTGCACATGAGAAACTTGCATCCACTTCTTATATCTCCAATGAA
Eilema caniola genome assembly, chromosome: Z.
OX421460.1:39131926-39131945
AATAACATGTTTCAAGCTGACTGTGCCCTT39131926TGGACCTTGCACATGAGAAAATGCTTTTAAGGTTACAAATAAATACGTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTCTCATGTGCAAGGTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTCTCATGTGCAAGGTCCA | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.383 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCTCATGTGCAAGGTCCA&k=0&no_gap=0&offset=0&limit=50
0.501 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=TGGACCTTGCACATGAGAAA&k=0&no_gap=0&offset=0&limit=48
0.503 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).