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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 13:35:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrH066C16R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH066C16, genomic survey sequence.
DU979976.1:2-20
A2AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGCCAAATC
BoCig11K10/F BOCIG Brassica oleracea genomic, genomic survey sequence.
FI569201.1:2-20
A2AGCTTTAAATAGACGTGCGAAATGTGAAGATATTAGCCAATGGCAAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:54629-54647
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA54629AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica rapa subsp. pekinensis clone KBrB085F20, complete sequence.
FP340617.1:74292-74310
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA74292AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69250321-69250339
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA69250321AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:26382644-26382662
AGGTTGTGATGTAAGTTCGGGTCTTTGTGA26382644AGCTTTAAATAGACGTGCGCACAAAGTGTGAAGCTATTAGCCAATGCCA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53191409-53191427
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA53191409AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41362661-41362679
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA41362661AGCTTTAAATAGACGTGCGAAATGTGAAGATATTAGCCAATGGCAAATC
Brassica rapa genome, scaffold: A09.
LR031568.1:57353056-57353074
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA57353056AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50610997-50611015
GGGTTGTGATTGAAGTTTGGGTCGTTGTGA50610997AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19494748-19494766
GGGTTGTGATTTAAGTTTCGGTCGTTGTGA19494748AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67877143-67877161
GGGTTGTGATTTAAGTTTGGGTCGTTGTGA67877143AGCTTTAAATAGACGTGCGAAATGTGAAGATCTTAGCCAATGGCAAATC
Argyrosomus regius genome assembly, chromosome: 24.
OX336905.1:11294329-11294347
TCTACATAAATATTCCCAGACGGGGCAATT11294329CGCACGTCTATTTAAAGCTTCAACGTTATCAAATATGTGTTTCTTTTCC
Blennius ocellaris genome assembly, chromosome: 9.
OY730209.1:14777380-14777398
TCCCCTCGCTTTTTTGGCATTCAGTCATGG14777380CGCACGTCTATTTAAAGCTCGGGAGGGATTTACTTAATAGAATCTACAG
Sequence 15573 from patent US 7420044.
GC577720.1:338-356
GCGCCGCGACGCCGGAACGTGGGCGTACGA338CGCACGTCTATTTAAAGCTCGGCACGCACGCCGTCGTCGCTGTCGCGTT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:313857-313875
GATTTGCCATTGGCTAATATCTTCACATTT313857CGCACGTCTATTTAAAGCTTCACAACGACCCAAACTTAAATCACAACCC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:344035-344053
TGGCATTGGCTAATAGCTTCACACTTTGTG344035CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Brassica rapa genome, scaffold: A10.
LR031577.1:363559-363577
TGGCATTGGCTAATAGCTTCACACTTTGTG363559CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:364017-364035
TGGCATTGGCTAATAGCTTCACACTTTGTG364017CGCACGTCTATTTAAAGCTTCACAAAGACCCGAACTTACATCACAACCT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24538203-24538221
GATTTGCCATTGGCTAAGATCTTCACATTT24538203CGCACGTCTATTTAAAGCTTCACAACGACCGAAACTTAAATCACAACCC
Mythimna lalbum genome assembly, chromosome: 14.
OX439358.1:4401713-4401731
TTACACACTTATATCATAATGTACTATTTA4401713CGCACGTCTATTTAAAGCTACTAAGAAGTAGATATTTCTATTAGAATCA
Phania funesta genome assembly, chromosome: 3.
OZ010654.1:30595964-30595982
ATATGATTGACAGAAAAATTGTAAGCAAAT30595964CGCACGTCTATTTAAAGCTAAAAATACATTCAAAAAAGCAAAACATTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/agctttaaatagacgtgcg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : agctttaaatagacgtgcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.371 | 0.362 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTTAAATAGACGTGCG&k=0&no_gap=0&offset=0&limit=50
0.511 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=CGCACGTCTATTTAAAGCT&k=0&no_gap=0&offset=0&limit=38
0.518 | 0.007 | cgi_end;

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