GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-18 07:31:04, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:32588080-32588102
AGTTGATGAAGCATGATACAAAAAACGAAT32588080CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:34990069-34990091
AGTTGATGAAGCATGATACAAAAAACGAAT34990069CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus domestica cultivar Red Fuji chromosome 2.
CP147794.1:34790104-34790126
AGTTGATGAAGCATGATACAAAAAACGAAT34790104CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACTTAGAGAGAGAGAGAG
Malus domestica cultivar Red Fuji chromosome 2.
CP147819.1:35033441-35033463
AGTTGATGAAGCATGATACAAAAAACGAAT35033441CTTCAAGTTCAGCATCAAGACAATACTAGTAGTAAACATAGAGAGAGAGAGAG
Tripolium pannonicum genome assembly, chromosome: 6.
OZ219255.1:73840269-73840291
CTGCTAAGGCCGCAGCGGCTGAGCCTGGTC73840269CTTCAAGTTCAGCATCAAGACAAGAGGCTTCAGGTGATCAATCAAGTCTTCTC
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:3472477-3472499
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472477TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar WA 38 chromosome 2B.
CP165685.1:3654261-3654283
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3654261TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar WA 38 chromosome 2A.
CP165702.1:3719246-3719268
CTCTCTCTCTCTCTATGTTTACTACTAGTA3719246TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar Golden Delicious chromosome 02.
CP168766.1:3436240-3436262
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3436240TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica cultivar Golden Delicious chromosome 02.
CP168783.1:3717308-3717330
CTCTCTCTCTCTCTATGTTTACTACTAGTA3717308TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:3621895-3621917
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3621895TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:3472413-3472435
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472413TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:3701233-3701255
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3701233TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:3710091-3710113
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3710091TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:3472319-3472341
CTCTCTCTCTCTCTAAGTTTACTACTAGTA3472319TTGTCTTGATGCTGAACTTGAAGATTCGTTTTTTGTATCATGCTTCATCAACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/cttcaagttcagcatcaagacaa
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : cttcaagttcagcatcaagacaa | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.258 | 0.249 | search_plus_done; http://172.18.8.135:50800/match?q=CTTCAAGTTCAGCATCAAGACAA&k=0&no_gap=0&offset=0&limit=50
0.384 | 0.126 | search_minus_done; http://172.18.8.135:50800/match?q=TTGTCTTGATGCTGAACTTGAAG&k=0&no_gap=0&offset=0&limit=45
0.391 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).