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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:17:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

030128ABPB002677HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB002677, mRNA sequence.
CN917410.1:38-57
CCAATTGCAAAGAAGGTAACCACTGAAGAT38GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGCATAACTGACGG
TSA: Pyrus pyrifolia mRNA, contig: contig_6818unknown.
FX408257.1:325-344
CCAATTGGAAAGAAGGTAATCACTGAAGAT325GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTANNNNTTTGTTTGGGT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:9003437-9003456
CCAATTGGAAAGAAGGTAATCACTGAAGAT9003437GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:8752841-8752860
CCAATTGGAAAGAAGGTAATCACTGAAGAT8752841GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:8645566-8645585
CCAATTGCAAAGAAGGTAACCACTGAAGAT8645566GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143386.1:7736651-7736670
CCAATTGGAAAGAAGGTAATCACTGAAGAT7736651GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:7705635-7705654
CCAATTGCAAAGAAGGTAACCACTGAAGAT7705635GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:8434297-8434316
CCAATTGGAAAGAAGGTAATCACTGAAGAT8434297GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:8098447-8098466
CCAATTGCAAAGAAGGTAACCACTGAAGAT8098447GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:8713808-8713827
CCAATTGGAAAGAAGGTAATCACTGAAGAT8713808GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus domestica genome assembly, chromosome: 14.
OU696690.1:8377475-8377494
CCAATTGCAAAGAAGGTAACCACTGAAGAT8377475GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:8792177-8792196
CCAATTGGAAAGAAGGTAATCACTGAAGAT8792177GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus domestica genome assembly, chromosome: 14.
OU744555.1:8649944-8649963
CCAATTGCAAAGAAGGTAACCACTGAAGAT8649944GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:8531565-8531584
CCAATTGGAAAGAAGGTAATCACTGAAGAT8531565GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus domestica genome assembly, chromosome: 14.
OU744966.1:8927918-8927937
CCAATTGCAAAGAAGGTAACCACTGAAGAT8927918GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:8764820-8764839
CCAATTGGAAAGAAGGTAATCACTGAAGAT8764820GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTACAGGTATTCTCATAT
Malus domestica genome assembly, chromosome: 14.
OU745004.1:8557159-8557178
CCAATTGCAAAGAAGGTAACCACTGAAGAT8557159GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTACTCTCATAT
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:6190461-6190480
CCAATTGCAAAGAAGGTAACCACTGAAGAT6190461GATGTGGTTCCAGAAGCTACTCCTGCTATACTGTATAGGTATTCTCATAT
Alisma plantago-aquatica genome assembly, chromosome: 4.
OY856412.1:982607552-982607571
AATATAACATCTAGCTTTATATTGTTGTCT982607552GATGTGGTTCCAGAAGCTACCAAACAATACCACCCTTTCCCTTCTTACTA
Dolomedes plantarius genome assembly, chromosome: X1.
OU015494.1:126493058-126493077
GTTTTAATTTGAAAAGACTTTGCTACCGCA126493058GATGTGGTTCCAGAAGCTACAGGAATATTGTATCAACCGCACTGGACAAA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:22351089-22351108
ATATGAGAGTACCTATACAGTATAGCAGGA22351089GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:23338447-23338466
ATATGAGAATACCTGTACAGTATAGCAGGA23338447GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:23336686-23336705
ATATGAGAGTACCTATACAGTATAGCAGGA23336686GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:22153506-22153525
ATATGAGAGTACCTATACAGTATAGCAGGA22153506GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:23410984-23411003
ATATGAGAGTACCTATACAGTATAGCAGGA23410984GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:23087935-23087954
ATATGAGAATACCTGTACAGTATAGCAGGA23087935GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:22761877-22761896
ATATGAGAGTACCTATACAGTATAGCAGGA22761877GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Crataegus laevigata genome assembly, chromosome: 15.
OY756952.1:24533875-24533894
ATATGAGAATACCTGTACAGTATAGCAGGA24533875GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:23987456-23987475
ATATGAGAATACCTATACAGTATAGCAGGA23987456GTAGCTTCTGGAACCACATCATCTTCAGTGGTTACCTTCTTTGCAATTGG
Pyrus communis genome assembly, chromosome: 9.
OY757076.1:20569614-20569633
ATATGAGAATACCTGTACAGTATAGCAGGA20569614GTAGCTTCTGGAACCACATCATCTTCAGTGATTACCTTCTTTCCAATTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gatgtggttccagaagctac
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gatgtggttccagaagctac | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.446 | 0.437 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTGGTTCCAGAAGCTAC&k=0&no_gap=0&offset=0&limit=50
0.570 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCTTCTGGAACCACATC&k=0&no_gap=0&offset=0&limit=30
0.576 | 0.007 | cgi_end;

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