GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-17 12:18:03, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdrtp1011I09_e38539.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5', mRNA sequence.
GO562075.1:120-140
ATTACTTGCAACATAGTAGCATGTAAACAT120GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:45426888-45426908
TTAACTTGCAACATAGTAGCATGTAAACAT45426888GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:49621728-49621748
ATTACTTGCAACATAGTAGCATGTAAACAT49621728GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:46264840-46264860
ATTACTTGCAACATAGTAGCATGTAAACAT46264840GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTATTAGATCTTTG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:46101058-46101078
TTAACTTGCAACATAGTAGCATGTAAACAT46101058GCCTTGAGTTTCTCAGCATTGTTCACTAAGTAAAATAGTTTTAGATCTTTG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:6785632-6785652
CAAAGATCTAATACTATTTTACTTAGTGAA6785632CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:6428000-6428020
CAAAGATCTAATACTATTTTACTTAGTGAA6428000CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACCATGTTGCAAGTTAT
Malus domestica cultivar Red Fuji chromosome 6.
CP147798.1:6786568-6786588
CAAAGATCTAATACTATTTTACTTAGTGAA6786568CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Red Fuji chromosome 6.
CP147823.1:6884146-6884166
CAAAGATCTAATACTATTTTACTTAGTGAA6884146CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar WA 38 chromosome 15B.
CP165698.1:6853465-6853485
CAAAGATCTAATACTATTTTACTTAGTGAA6853465CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar WA 38 chromosome 15A.
CP165715.1:6741772-6741792
CAAAGATCTAATACTATTTTACTTAGTGAA6741772CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Golden Delicious chromosome 15.
CP168779.1:6865865-6865885
CAAAGATCTAATACTATTTTACTTAGTGAA6865865CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica cultivar Golden Delicious chromosome 15.
CP168796.1:6704643-6704663
CAAAGATCTAATACTATTTTACTTAGTGAA6704643CAATGCTGAGAAACTCAAGGCATGTTTGCATGCTACAATATTGCAAGTAAT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:6881627-6881647
CAAAGATCTAATACTATTTTACTTAGTGAA6881627CAATGCTGAGAAACTCAAGGCATGTTTGCATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:6794116-6794136
CAAAGATCTAATACTATTTTACTTAGTGAA6794116CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:6934177-6934197
CAAAGATCTAATACTATTTTACTTAGTGAA6934177CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:6859565-6859585
CAAAGATCTAATACTATTTTACTTAGTGAA6859565CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:6847820-6847840
CAAAGATCTAATACTATTTTACTTAGTGAA6847820CAATGCTGAGAAACTCAAGGCATGTTTACATGCTACTATGTTGCAAGTAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gccttgagtttctcagcattg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gccttgagtttctcagcattg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.445 | 0.436 | search_plus_done; http://172.18.8.135:50800/match?q=GCCTTGAGTTTCTCAGCATTG&k=0&no_gap=0&offset=0&limit=50
0.598 | 0.152 | search_minus_done; http://172.18.8.135:50800/match?q=CAATGCTGAGAAACTCAAGGC&k=0&no_gap=0&offset=0&limit=45
0.606 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).