GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 06:12:11, GGGenome : Rhesus pre-spliced RNA, RefSeq on Mmul_10/rheMac10, D3G 23.02 (Feb, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

XM_015118624.2|COX10;718301|chr16:13863555:13987221:+|prespliced::chr16:13863555-13987221(+)
position: 27270-27284
GCCTCTGGGCCTATATTAGATGGGCCATGC27270TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
NM_001194644.1|COX10;718301|chr16:13863558:14003752:+|prespliced::chr16:13863558-14003752(+)
position: 27267-27281
GCCTCTGGGCCTATATTAGATGGGCCATGC27267TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
XM_001100209.4|HESX1;704551|chr2:113356010:113384258:-|prespliced::chr2:113356010-113384258(-)
position: 25584-25598
ACTATGCTGCACTCCAAATACTATTGTGTT25584TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
XM_028848051.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848053.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848054.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848055.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848056.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848057.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848058.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_028848059.1|TENM3;700867|chr5:178767098:180127370:+|prespliced::chr5:178767098-180127370(+)
position: 1911-1925
TTTGGACCCCCAGATCAGTCTTCATATTCT1911TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
XM_015139652.2|F11;702117|chr5:183545316:183572015:+|prespliced::chr5:183545316-183572015(+)
position: 12638-12652
GCCTGAGCCACCATGCCCAGCTTGCTATTC12638TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_015139653.2|F11;702117|chr5:183545316:183572015:+|prespliced::chr5:183545316-183572015(+)
position: 12638-12652
GCCTGAGCCACCATGCCCAGCTTGCTATTC12638TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
XM_001084620.3|SYT1;695390|chr11:78464657:79062480:+|prespliced::chr11:78464657-79062480(+)
position: 244673-244687
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244673AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015152349.2|SYT1;695390|chr11:78464662:79062480:+|prespliced::chr11:78464662-79062480(+)
position: 244668-244682
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244668AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015152348.2|SYT1;695390|chr11:78464704:79062480:+|prespliced::chr11:78464704-79062480(+)
position: 244626-244640
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244626AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_015152346.2|SYT1;695390|chr11:78464731:79062480:+|prespliced::chr11:78464731-79062480(+)
position: 244599-244613
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA244599AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
XM_001100761.4|LOC704111;704111|chr19_NW_021160375v1_random:146198:160055:-|prespliced::chr19_NW_021160375v1_random:146198-160055(-)
position: 1565-1579
CATTGCCAGGAGAGCTGTTAACATTATACT1565AATGTTGTCAATGAAAAGCTAAGATAGGCCGGCGTGGTGGCTCAC
XR_001445025.2|LOC106998534;106998534|chr5:146514149:146527572:-|prespliced::chr5:146514149-146527572(-)
position: 218-232
TTAATATTAATATTAAATGGATGCCCACAA218AATGTTGTCAATGAAAATCTGTGTTCAAAGCGATAATATATTCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/rheMac10_RefSeq_prespliced_d3g2302/TTCATTGACAACATT
lang : en | db : rheMac10_RefSeq_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.088 | 0.080 | search_plus_done; http://172.18.8.78:28951/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.106 | 0.017 | search_minus_done; http://172.18.8.78:28951/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=37
0.110 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).