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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 01:03:27, GGGenome : Rat genome, RGSC 5.0/rn5 (Mar, 2012)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2:60985890-60985904
TTTTCAAAATCTTTTGCCTGTATAGACTTT60985890TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT
chr2:77241554-77241568
CCTCTCCCATTTACATTTAGTTTTAAGTAA77241554TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
chr2:111132974-111132988
TGAATGAAAGGTCAGAGTTCAAGGTGTGAT111132974TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT
chr14:32165809-32165823
GAAGCTAATAGTGCAATCGCCATGGTCTCC32165809TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA
chr18:24411369-24411383
ACATTCCTTACTCCTCTGACAGCAGTTTCT24411369TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT
chr2:84356655-84356669
ATTTGGAGTTGGGGTCTATAGCTGCCATAG84356655AATGTTGTCAATGAAACCTAATGGGTTGTTATGGTGAAAGTTCAG
chr2:258257794-258257808
ATACCAAGTAAAAAAACAAAAAAACAAAAA258257794AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG
chr3:36451894-36451908
CTACTTATTCATTCATGTATGTGGGTTTCA36451894AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT
chr4:231514733-231514747
CACACGAGTGTCTATCTCTCTATTTTCTTT231514733AATGTTGTCAATGAAAATACCATACCGTCTTGCTTAGCGCAGTTT
chr5:101992139-101992153
CATTGTCAACAGTTATACATTTGAAACTTT101992139AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr5:102066527-102066541
CATTGTCAACAGTTATACATTTGAAACTTT102066527AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr6:78769998-78770012
CCATAGATTAGTCATAGATAGCAGCTACTA78769998AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT
chr7:112559627-112559641
TCTCTTATGTATCCATTGTCCAATTTCTAG112559627AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/rn5/TTCATTGACAACATT
lang : ja | db : rn5 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.129 | 0.121 | search_plus_done; http://172.18.8.77:28055/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.134 | 0.005 | search_minus_done; http://172.18.8.77:28055/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.136 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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