GGGenome | Results

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2025-04-04 20:56:57, GGGenome : Rat genome, RGSC Rnor_6.0/rn6 (Jul, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr2
position: 41926733-41926747

TTTTCAAAATCTTTTGCCTGTATAGACTTT41926733TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT

chr2
position: 57234252-57234266

CCTCTCCCATTTACATTTAGTTTTAAGTAA57234252TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT

chr2
position: 60329867-60329881

CTGAACTTTCACCATAACAACCCATTAGGT60329867TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT

chr2
position: 91373041-91373055

TGAATGAAAGGTCAGAGTTCAAGGTGTGAT91373041TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT

chr4
position: 160096536-160096550

AAACTGCGCTAAGCAAGACGGTATGGTATT160096536TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG

chr14
position: 32365434-32365448

GAAGCTAATAGTGCAATCGCCATGGTCTCC32365434TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA

chr18
position: 24697076-24697090

ACATTCCTTACTCCTCTGACAGCAGTTTCT24697076TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT

chr2
position: 239732088-239732102

ATACCAAGTAAAAAAACAAAAAAACAAAAA239732088AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG

chr3
position: 31282717-31282731

CTACTTATTCATTCATGTATGTGGGTTTCA31282717AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT

chr5
position: 97952035-97952049

CATTGTCAACAGTTATACATTTGAAACTTT97952035AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA

chr5
position: 98026329-98026343

CATTGTCAACAGTTATACATTTGAAACTTT98026329AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA

chr6
position: 69203225-69203239

CCATAGATTAGTCATAGATAGCAGCTACTA69203225AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT

chr7
position: 112621412-112621426

TCTCTTATGTATCCATTGTCCAATTTCTAG112621412AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC

chr11
position: 80854350-80854364

TTATTCTCTTTAAAATTCACCACAAGGAAA80854350AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTAAAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.75:28872/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.009 | search_minus_done; http://172.18.8.75:28872/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.096 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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