GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-23 17:02:36, GGGenome : Squirrel genome, Broad/speTri2 (Nov, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH393279:49282503-49282517
AATATCATAACATTTATCAAAAATGTTTTT49282503TTCATTGACAACATTTAATACACTAGTTGGGTAGTTTTCAAGAGT
JH393333:1358821-1358835
CATGATAACAATCTGAGTCATGTAGTTGAG1358821TTCATTGACAACATTTAAATAATCCATGGCTCTTTTCCACTGTTC
JH393387:967190-967204
TTACCAAGAATAGGGAACTTCTTTGCCTTG967190TTCATTGACAACATTCCTCAGATTTACAATAGTGCTCAACAGTTA
JH393399:1612914-1612928
TCTTTAACCTATAAAGAATGTAACTGTTTA1612914TTCATTGACAACATTTTTACTTAAATGGCAGATAAAACAAAAAAG
JH393408:788140-788154
AATTTTCCCAATGAGCCAATAAGCTGTAGA788140TTCATTGACAACATTAGCTTGTAAGCTAAACCTCTCTTTCTCAGG
AGTP01148074:41-55
AGTGAAATACACCCTGACTTTATGCCAACT41TTCATTGACAACATTCTATAGTTACATTTTCAGCAGTCTATGAAA
JH393280:44953479-44953493
AATTTTAGAAAAAAAAACAAGAACTCCAAA44953479AATGTTGTCAATGAAAAAAACTGGAAGGGGAATCTAGAAAGGGAA
JH393283:7548241-7548255
GCCTGTTTTTCATATGCATATGTAATAGTG7548241AATGTTGTCAATGAAAACACAATGGTATTTGGAGTGCAGCATACT
JH393284:13443493-13443507
CTGGGCTGAGGGTGGAGGATGAGAAAAACA13443493AATGTTGTCAATGAAACCGAGAAGAAGGGGAGAAACTTCGAATAT
JH393293:18081227-18081241
ATAAATAGCAAAGAGAAAAACAGGAAGGGA18081227AATGTTGTCAATGAAAGAAAACTTAAAGGAACTGTGGCATTTGCA
JH393305:11159542-11159556
TTTTTAAAATTAACAAATGCCCATTTTAAA11159542AATGTTGTCAATGAAGTGAATATGGAAAAATAAGAATTCTGTGGA
JH393323:4557295-4557309
ATAATTCAGTTACATCATATAATTATATTT4557295AATGTTGTCAATGAATAGAGATCCACTTAATGATTCTAAATTGAG
JH393333:7093567-7093581
CAGAATAAAGTTGAGTTTCAGTAAATATTT7093567AATGTTGTCAATGAAATGTGAAATAATTTCTTTAAATTCTGACCT
JH393341:5747397-5747411
ACAGCTAGGAAGAACATATGACTATGGAAT5747397AATGTTGTCAATGAATTTTTGCCCTCAAACCTTAAATCCTTAAAA
JH393375:2484372-2484386
CTAAAATTGTCCACATTTATTAACTATTTT2484372AATGTTGTCAATGAATAATGATTTTTATATTAGGATTTCATAATC
JH393382:401757-401771
TTAATAAAATGGTACTAACAAATATCAATG401757AATGTTGTCAATGAATTCCATGGATATTATGGGTGATGGTCAAGA
JH393429:2650992-2651006
GAGTAGTGAGAATGTACATCAGGAAACATA2650992AATGTTGTCAATGAAAAATGGGGAGACCCTGTTATATTGGGGGTA
JH393519:2254507-2254521
TTCTACAGGTTATGTGCCCCCTTTCTAAGA2254507AATGTTGTCAATGAATGAAAATTCAAATCAGAATGAATAAATCAC
JH393526:941929-941943
CAATTAAAATGGCTTGAAGCCATTGAAGGT941929AATGTTGTCAATGAAGACAGTATACCATGGGTCCCACCTCTGAGC
JH393539:1269175-1269189
TGATGCTTTAAACAACAACAAAAATCTTCA1269175AATGTTGTCAATGAAAGCCAACCTATTCCACAATTATAAATATTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/speTri2/TTCATTGACAACATT
lang : en | db : speTri2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.77:28061/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.77:28061/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.089 | 0.003 | cgi_end;

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