GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:33:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRCS01_01aa10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
CB290207.1:397-416
CCAGCTTCTATTCCACTGATTAGCGAGAAT397CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS01_02be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be08, mRNA sequence.
CB291108.1:418-437
CCAGCTTCTATTCCACTGATTAGCGAAAAT418CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS01_04cd07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.
CB292488.1:226-245
CCAGCTTCTATTCCACTGATTAGCGAGAAT226CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS01_05ac07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ac07, mRNA sequence.
CB292794.1:314-333
CCAGCTTCTATTCCACTGATTAGCGAGAAT314CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCR01_01C19_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.
CF828171.1:382-401
CCAGCTTCTATTCCACTGATTAGCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCR01_01C20_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C20, mRNA sequence.
CF828173.1:382-401
CCAGCTTCTATTCCACTGATTAGCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCR01_01E19_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01E19, mRNA sequence.
CF828248.1:382-401
CCATCTTCTATTCCACTGATTATCGAGAAT382CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCR01_03H23_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa03H23, mRNA sequence.
CF829642.1:395-414
CCAGCTTCTATTCCACTGATTAGCGAGAAT395CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCR01_05N10_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N10, mRNA sequence.
CF831126.1:304-323
CCAGCTTCTATTCCACTGATTAGCGAGAAT304CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS02_03A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A21, mRNA sequence.
CF833118.1:419-438
CCAGCTTCTATTCCACTGATTAGCGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS04_0001A12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
CN181493.1:353-372
CCAGCTTCTATTCCACTGATTAGCGAGAAT353CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS04_0001H12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H12, mRNA sequence.
CN181779.1:417-436
CCAGCTTCTATTCCACTGATTAGCGAGAAT417CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS04_0002G19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G19, mRNA sequence.
CN182417.1:419-438
CCAGCTTCTATTCCACTGATTAGCGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS06_0002E03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E03, mRNA sequence.
CN189681.1:419-438
CCAGCTTCTATTCCACTGATTAACGAGAAT419CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRPT01_0013C10_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013C10, mRNA sequence.
CV709624.1:390-409
CCAGCTTCTATTCCACTGATTAGCGAGAAT390CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS08_0004O23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0004O23, mRNA sequence.
CV714871.1:302-321
CCAGCTTCTATTCCACTGATTAGCGAGAAT302CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS04_2_012D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D12, mRNA sequence.
CV885078.1:302-321
CCAGCTTCTATTCCACTGATTAGCGAGAAT302CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS04_2_022A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_022_T7_A06, mRNA sequence.
CV886259.1:383-402
CCAGCTTCTATTCCACTGATTAGCGAGAAT383CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRPT02_59E09_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-59E09-I18-1-6.b, mRNA sequence.
CX642329.1:314-333
CCAGCTTCTATTCCACTGATTAGCGAGAAT314CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCP01_030_H10_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_030_T7_H10, mRNA sequence.
CX667393.1:406-425
CCAGCTTCTATTCCACTGATTAGCGAGAAT406CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS11_05A15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005A15, mRNA sequence.
DN620240.1:531-550
GTTGTTCGAGTAGAGAAATTGTCAACATAC531CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCS11_06I15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006I15, mRNA sequence.
DN621308.1:339-358
CCAGCTTCTATTCCACTGATTAGCGAGAAT339CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
UCRCA01_04J15_f Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0004J15, mRNA sequence.
DN624164.1:426-445
CCAGCTTCTATTCCACTGATTAGCGAGAAT426CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
CP-20_H10_089.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP-20_H10_089 3', mRNA sequence.
EB685053.1:415-434
CCAGCTTCTATTCCACTGATTAGCGAGAAT415CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
CP49_F03_027.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP49_F03_027 3', mRNA sequence.
EB687477.1:408-427
CCAGCTTCTATTCCACTGATTAGCGAGAAT408CCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAG
Ailanthus altissima genome assembly, chromosome: 2.
OX327684.1:31970711-31970730
ATTCACAATTAGACAAAATTGTCAGCATAC31970711CCAGTAATCCTCGCCATCATCACTAGTCCCCCAACCAATGAGCTTAACAG
USDA-FP_00453 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00453 5', mRNA sequence.
BQ623362.1:483-502
CTGTTAAGCTTATTGGTTGGGGAACTAGTG483ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP_121000-741 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-40_G12 5', mRNA sequence.
CF506243.1:278-297
CTGTTAAGCTTATTGGTTGGGGAACTAGTG278ATGATGGCGAGGATTACTGGATTCTCGCTAATCA
UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.
CF828170.1:643-662
CTGTTAAGCTTATTGGTTGGGGAACTAGTG643ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
UCRCR01_01C20_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C20, mRNA sequence.
CF828172.1:644-663
CTGTTAAGCTTATTGGTTGGGGAACTAGTG644ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP_3953 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE19C12 5', mRNA sequence.
CK665478.1:174-193
CTGTTAAGCTTATTGGTTGGGGAACTAGTG174ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP_6596 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E01 5', mRNA sequence.
CK740102.1:122-141
CTGTTAAGCTTATTGGTTGGGGAACTAGTG122ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CGF1004438_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E07 5', mRNA sequence.
CK938768.1:651-670
CTGTTAAGCTTATTGGTTGGGGAACTAGTG651ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
C02014G03SK IF1 Citrus clementina cDNA clone C02014G03, mRNA sequence.
CX289566.1:363-382
CTGTTAAGCTTATTGGTTGGGGAACTAGTG363ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
C06021C10SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06021C10, mRNA sequence.
CX299328.1:362-381
CTGTTAAGCTTATTGGTTGGGGAACTAGTG362ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
UCRPT02_59E09_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-59E09-I18-1-5.g, mRNA sequence.
CX642330.1:573-592
CTGTTAAGCTTATTGGTTGGGGAACTAGTG573ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
UCRCP01_030_H10_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_030_T3_H10, mRNA sequence.
CX667392.1:723-742
CTGTTAAGCTTATTGGTTGGGGAACTAGTG723ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
Citrus unshiu mRNA, clone: STG2_0787, 5'-end sequence, expressed in style.
DC899561.1:190-209
CTGTTAAGCTTATTGGTTGGGGAACTAGTG190ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP/ARO_13123 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-33_C11 5', mRNA sequence.
DN798255.1:638-657
CTGTTAAGCTTATTGGTTGGGGAACTAGTG638ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP/ARO_15448 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-26_E04 5', mRNA sequence.
DN959618.1:412-431
CTGTTAAGCTTATTGGTTGGGGAACTAGTG412ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
USDA-FP/ARO_15687 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-30_D06 5', mRNA sequence.
DN959857.1:329-348
CTGTTAAGCTTATTGGTTGGGGAACTAGTG329ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
Volcani_7_09_G6 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX447549.1:632-651
CTGTTAAGCTTATTGGTTGGGGAACTAGTG632ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CS00-C1-101-022-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660466.1:101-120
CTGTTAAGCTTATTGGTTGGGGAACTAGTG101ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CS00-C1-101-024-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660680.1:115-134
CTGTTAAGCTTATTGGTTGGGGAACTAGTG115ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CS00-C3-701-023-C03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY703652.1:874-893
GCTNGTAAGCTNATGGNTGGGGAACTANTG874ATGATGGCGAGGATTACTGGGATCCTCCTATANTGGAATNAAACTGGGTG
CS00-C3-701-031-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704337.1:369-388
CTGTTAAGCTTATTGGTTGGGGAACTAGTG369ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CS00-C3-702-038-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY714105.1:548-567
CTGTTAAGCTTATTGGTTGGGGAACTAGTG548ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
CR05-C1-103-053-C12-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY779598.1:524-543
CTGTTAAGCTTATTGGTTGGGGAACTAGTG524ATGATGGCGAGGATTACTGGATCCTCGCTAATCATGGGAATAGAAGCTGG
PT11-C1-901-028-E05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY821281.1:492-511
CTGTTAAGCTTATTGGTTGGGGAACTAGTG492ATGATGGCGAGGATTACTGGATTCTCGCTAGTCAATGGAATAAAAACTGG
PT11-C2-301-020-E03-CT.F Poncirus trifoliata bark, infected with Phytophthora parasitica Citrus trifoliata cDNA, mRNA sequence.
EY835206.1:57-76
CTGTTAAGCTTATTGGTTGGGGAACTAGTG57ATGATGGCGAGGATTACTGGATTCTCGCTAATCAGTGGAATAGAAGCTGG
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:21651315-21651334
CTGTTAAGCTTATTGGTTGGGGAACTAGTG21651315ATGATGGCGAGGATTACTGGGTATGTTGACAATTTCTCTACTCGAACAAC
Sepia lycidas genome assembly, chromosome: 6.
OZ010576.1:41738062-41738081
ATGTAGGAGGAAAATTAAGTCATGTCTTGA41738062ATGATGGCGAGGATTACTGGCCAAAAATATAAATTATTGTTACGTTGTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGTAATCCTCGCCATCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGTAATCCTCGCCATCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.231 | 1.222 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGTAATCCTCGCCATCAT&k=0&no_gap=0&offset=0&limit=50
2.826 | 1.595 | search_minus_done; http://172.18.8.135:50400/match?q=ATGATGGCGAGGATTACTGG&k=0&no_gap=0&offset=0&limit=24
2.843 | 0.017 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).