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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:09:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

39RDBRT_UP_049_D05_22JUL2004_041 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX273040.1:126-145
TCTCTTAAAACAGTTTAAATCCGTGATTCT126CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA
BNSCSICT_UP_013_A08_23NOV2004_064 Brassica napus seed coat BNSCSICT Brassica napus cDNA 5', mRNA sequence.
DY010916.1:127-146
TTCTCTTAAACAGTTTAAATCCTTGATTCT127CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA
BNYS2DCT_UP_015_A08_01MAR2005_064 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE474528.1:122-141
TTCTCTTAAACAGTTCAAATCCGTGATTCT122CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA
BNSCS3CT_UP_055_B02_04MAY2007_014 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV040878.1:127-146
TTCTCTTAAACAGTTCAAATCCGTGATTCT127CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA
0118308 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV112996.1:171-190
TTCTCTTAAACAGTTTAAATCCTTGATTCT171CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA
BR077519 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-085H01 5', mRNA sequence.
EX091229.1:81-100
TTCTCTTAAACAGTTCAAATCCGTGATTCT81CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA
BR080371 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-144H08 5', mRNA sequence.
EX094081.1:136-155
TTCTCTTAAACAGTTCAAATCCGTGATTCT136CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA
BR084181 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-057C04 5', mRNA sequence.
EX097891.1:139-158
TTCTCTTAAACAGTTCAAATCCGTGATTCT139CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA
BR084971 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-007H04 5', mRNA sequence.
EX098681.1:135-154
TTCTCTTAAACAGTTCAAATCCGTGATTCT135CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08H14, 5'-end sequence.
FY066390.1:128-147
TCTCTTAAAACAGTTTAAATCCGTGATTCT128CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAACGAAGAAGAA
c08_12na_2k.s 12na Brassica napus cDNA clone c08_12na_2k 5, mRNA sequence.
GT081273.1:141-160
TTCTCTTAAACAGTTTAAATCCTTGATTCT141CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTAGAAAGAAGAAGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9536.
FX704971.1:128-147
TTCTCTTAAACAGTTCAAATCCGTGATTCT128CTAGATTCTCCACATCCAGGAGGCTCTTGTGCGTTTTGAAAGAAGACGAA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:12462489-12462508
TTCTCTTAAACAGTTTAAATCCGTGATTCT12462489CTAGATTCTCCACATCCAGGAGGTGAGTTTCTCCTCCGATCTCTCGTTCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31807.
FX759046.1:523-542
TTCTTCTACTTTCTAAACGCACAAGAGCCT523CCTGGATGTGGAGAATCTAGAGAATCACGGATTTAAACTGTTTAAGAGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:154497-154516
GAAACGAGAGATCGGAGGAGAAACTCACCT154497CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59545945-59545964
GGAACGAGAGATCGGAGGAGAAACTCACCT59545945CCTGGATGTGGAGAATCTAGAGAATCGCGGATTTGAACTGTTTAAGAGAA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43397407-43397426
GAAACGAGAGATCGGAGGAGAAACTCACCT43397407CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:29297458-29297477
GAACGAGAGGATCGGAGGAGAAACTCACCT29297458CCTGGATGTGGAGAATCTAGAGAATCAAGGATTTAAACTGTTTAAGAGAA
Brassica rapa genome, scaffold: A09.
LR031568.1:47720614-47720633
GAAACGAGAGATCGGAGGAGAAACTCACCT47720614CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:38583140-38583159
GGAACGAGAGATCGGAGGAGAAACTCACCT38583140CCTGGATGTGGAGAATCTAGAGAATCACGGATTTAAACTGTTTAAGAGAA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58187118-58187137
GAAACGAGAGATCGGAGGAGAAACTCACCT58187118CCTGGATGTGGAGAATCTAGAGAATCACGGATTTGAACTGTTTAAGAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTAGATTCTCCACATCCAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAGATTCTCCACATCCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.930 | 0.921 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGATTCTCCACATCCAGG&k=0&no_gap=0&offset=0&limit=50
1.067 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGGATGTGGAGAATCTAG&k=0&no_gap=0&offset=0&limit=37
1.072 | 0.005 | cgi_end;

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