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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:46:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-26660 Leaf Coffea canephora cDNA clone cccl1f23 5', mRNA sequence.
DV685362.1:489-507
TGGTCTTAATTCCTCTTCCGGCGGGGAATG489GCGGCCATCCTTGTCTTCGATTTGAGAAGACAACGTTTTACATGAGAGG
CGN-26757 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV685439.1:57-75
TGGTCGTAATTCCTCTTCCGGCGGGGAATG57GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CGN-29884 Leaf Coffea canephora cDNA clone cccl4c6 5', mRNA sequence.
DV687771.1:229-247
TGGTCGTAATTCCTCTTCCGGCGGGGAATG229GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CGN-30525 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV688113.1:64-82
TGGTCGTAATTCCTCTTCCGGCGGGGAATG64GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CGN-32862 Leaf Coffea canephora cDNA clone cccl18e1 5', mRNA sequence.
DV689714.1:127-145
TGGTCGTAATTCCTCTTCCGGCGGGGAATG127GCGGCCATCCTTGTCTTCGATTTGTGAAGACTACGTTTTACATGAGAGG
CGN-33298 Leaf Coffea canephora cDNA clone cccl18e14 5', mRNA sequence.
DV690042.1:361-379
TGGTCGTAATTCCTCTTCCGGCGGGGAATG361GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CGN-36069 Leaf Coffea canephora cDNA clone cccl26c2 5', mRNA sequence.
DV692210.1:502-520
TGGTCATAATTCCTCTTCCGGGGGGGAATG502GCGGCCATCCTTGTCTTCGATTTGAGAAGACAACGTTTTACATGAGAGG
CGN-36273 Leaf Coffea canephora cDNA clone cccl16o1 5', mRNA sequence.
DV692367.1:160-178
TGGTCATAATTCCTCTTCCGGCGGGGAATG160GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CGN-61887 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w30n16 5', mRNA sequence.
DV712755.1:501-519
TGGTCGTAATTCCTCTTCCGGCGGGGAATG501GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
TransId-86392 CACAT36L Coffea arabica cDNA clone CACAT36L_12_G02_023.F, mRNA sequence.
GR986074.1:491-509
TGGTCGTAATTCCTCTTCCGGCGGGGAATG491GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CC00-XX-SH3-039-A11-EM.F Coffea canephora SH3 Coffea canephora cDNA clone CC00-XX-SH3-039-A11-EM, mRNA sequence.
GT647314.1:194-212
TGGTCGTAATTCCTCTTCCGGCGGGGAATG194GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CA00-XX-IC1-028-C04-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-028-C04-EC, mRNA sequence.
GW435315.1:479-497
TGGTCGTAATTCCTCTTCCGGCGGGGAATG479GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CA00-XX-SH2-061-B08-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-061-B08-EM, mRNA sequence.
GW440861.1:467-485
TGGTCGTAATTCCTCTTCCGGCGGGGAATG467GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CA00-XX-SH2-024-H12-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-024-H12-EM, mRNA sequence.
GW441504.1:135-153
TGGTCGTAATTCCTCTTCCGGCGGGGAATG135GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CCES34 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110685.1:497-515
TGGTCGTAATTCCTCTTCCGGCGGGGAATG497GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
CCES35 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110686.1:497-515
TGGTCGTAATTCCTCTTCCGGCGGGGAATG497GCGGCCATCCTTGTCTTCGATTTGTGAAGACAACGTTTTACATGAGAGG
Bradyrhizobium elkanii strain K02K-Be chromosome, complete genome.
CP126002.1:236236-236254
CGCGCCGAGGCCCGCCCGCGAATCGTAGAG236236GCGGCCATCCTTGTCTTCGGAGGACTTGATTGATTTGATCGCATCGGGG
Bradyrhizobium elkanii strain K03D-Be chromosome, complete genome.
CP126029.1:238329-238347
CGCGCCGAGGCCCGCCCGCGAATCGTAGAG238329GCGGCCATCCTTGTCTTCGGAGGATTTGATCGACTTGATCGCATCGGGA
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:156295153-156295171
TTGGCCGATTAGATGGTCCCGGTCATATTG156295153GCGGCCATCCTTGTCTTCGGAACGTGTTGATTAATTTCTAAGATTCCTC
uncultured Cohaesibacter sp. isolate c11f5eba-291c-42f9-ba67-a1d324372fbb genome assembly, chromosome: 22.
OY759870.1:156924-156942
GACCCACGGCGCGCTCTATGCGTGGGAATT156924CGAAGACAAGGATGGCCGCGAACTCCGCGTCAAGGTTCAGGGGCAGGTG
Rhizoctonia solani strain AG-1 IA isolate XN chromosome 6.
CP059663.1:1017704-1017722
TCATGTCCAGCAGCTCATGTACCACCAAGC1017704CGAAGACAAGGATGGCCGCAAGACCCTCCGCGCGCCGTTGTTTTTCACC
Rhizoctonia solani strain AG1-IA_HG81 chromosome 6.
CP102648.1:1143963-1143981
TCATGTCCAGCAGCTCATGTACCACCAAGC1143963CGAAGACAAGGATGGCCGCAAGACCCTCCGCGCGCCGTTGTTTTTCACC
Streptomyces sp. NBC_00180 strain NBC 00180 chromosome, complete genome.
CP108140.1:8973694-8973712
ACAGCGCGGCAGGCGCGCCCGTGGCCGAAT8973694CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAATGGAGTCCCGGCATT
Streptomyces sp. NBC_01017 chromosome, complete genome.
CP108683.1:10287345-10287363
GCAGCGCGGCAGGCGCACCGGTGGCCGAAT10287345CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAGTGGAGTTCCGGAATT
Streptomyces sp. NBC 01614 strain NBC_01614 chromosome, complete genome.
CP109302.1:10325771-10325789
ACAGCGCGGCAGGCGCGCCCGTGGCCGAAT10325771CGAAGACAAGGATGGCCGCTTGATGGGTCGGCAATGGAGTCCCGGCATT
Bradyrhizobium pachyrhizi strain CB1923 chromosome, complete genome.
CP121667.1:8622333-8622351
CCCTGACGCGATCAAGTCAATCAAGTCCTC8622333CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG
Bradyrhizobium elkanii strain K03I-Be chromosome, complete genome.
CP126003.1:9014511-9014529
CCCCGATGCGATCAAATCAATCAAGTCCTC9014511CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG
Bradyrhizobium elkanii USDA 94 chromosome, complete genome.
CP126007.1:9246444-9246462
TCCCGATGCGATCAAGTCGATCAAATCCTC9246444CGAAGACAAGGATGGCCGCCTCTACGATTCGCGGGCGGGCCTCGGCGCG
Bradyrhizobium elkanii strain S15H-Be chromosome, complete genome.
CP126036.1:9475648-9475666
TCCCGATGCGATCAAGTCGATCAAATCCTC9475648CGAAGACAAGGATGGCCGCCTCTACGATTCACGGGCGGGTCTCGGCGCG
Sinorhizobium medicae strain ml42 chromosome, complete genome.
CP140900.1:872244-872262
CCGCGACCGCGCAGAAGACCGAGCCTGCGA872244CGAAGACAAGGATGGCCGCGCGGAAGATGCGTTTGGCGCCGAACCGATC
Hartmannibacter diazotrophicus strain E19T genome assembly, chromosome: 1.
LT960614.1:4753963-4753981
CCGCCGAGCGCGTGGCCCAGTCCGCCAGCG4753963CGAAGACAAGGATGGCCGCGCCGCCGCCGATGGCCGCGCCCTTGATGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGGCCATCCTTGTCTTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGGCCATCCTTGTCTTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.923 | 0.913 | search_plus_done; http://172.18.8.135:50400/match?q=GCGGCCATCCTTGTCTTCG&k=0&no_gap=0&offset=0&limit=50
1.054 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAGACAAGGATGGCCGC&k=0&no_gap=0&offset=0&limit=31
1.062 | 0.008 | cgi_end;

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