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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 08:53:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium raimondii clone GR__Ba0005I14-jfn, complete sequence.
AC243106.1:69528-69547
CGCCACCGGACTCTTCTGTTGCATGCCCAA69528GCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTC
Gossypium hirsutum clone MX177F15-jon, complete sequence.
AC243164.1:77717-77736
CGCCACCGGACTCTTCTGTTGCATGCCCAA77717GCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:46074852-46074871
CGCCACCGGACTCTTCTGTTGGATGCCCAA46074852GCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTC
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:105786333-105786352
CGCCACCGGACTCTTCTGTTGCATGCCCAA105786333GCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTC
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:164734209-164734228
CGCCACCGGACTCTTCTGTTGCATGCCCAA164734209GCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCTGACATTC
Theobroma cacao genome assembly, chromosome: 8.
OY284465.1:19524258-19524277
CGCAACCGGACTCTTCTGTTGCATGCCCAC19524258GCTGTAGGGCTCTCTACTCGTCATCACTCCCGTCTCAGATCCCGACATTT
Sequence 22933 from patent US 7557201.
GP491936.1:132-151
GAATGTCGGGATCTGAGACGGGAATGATGG132CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Sequence 15731 from patent US 8030546.
GY467956.1:438-457
GAATGTCGGGATCTGAGACGGGAATGATGG438CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Sequence 15731 from patent US 10597667.
MO979109.1:438-457
GAATGTCGGGATCTGAGACGGGAATGATGG438CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
GA__Ed0075A07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0075A07f, mRNA sequence.
BQ404803.1:95-114
ATATGTCGGGATCTGTANACGGGATGATGG95CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
EST1068214 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557574.1:419-438
GAATGTCGGGATCTGAGACGGGAATGATGG419CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
EST1069664 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559024.1:438-457
GAATGTCGGGATCTGAGACGGGAATGATGG438CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
UFL_534_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES793498.1:152-171
GAATGTCGGGATCTGAGACGGGAATGATGG152CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
UFL_174_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES814153.1:328-347
GAATGTCGGGATCTGAGACGGGAATGATGG328CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
UFL_191_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES817979.1:220-239
GAATGTCGGGATCTGAGACGGGAATGATGG220CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
ndcxa0_0003_E12.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ368595.1:107-126
GAATGTCGGGATCTGAGACGGGAATGATGG107CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
ndcxc0_0033_B12.ab1 Upland cotton seedling roots at 0h control (ndcxc) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ376576.1:231-250
GAATGTCGGGATCTGAGACGGGAATGATGG231CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Gossypium arboreum clone GM105F19-jnd, complete sequence.
AC243098.1:76684-76703
GAATGTCGGGATCTGAGACGGGAATGATGG76684CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Gossypioides kirkii chromosome KI_01.
CP032244.1:8943403-8943422
GAATGTCGGGATCTGAGACAGGAATGATGG8943403CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:14136476-14136495
GAATGTCGGGATCTGAGACGGGAATGATGG14136476CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:19883298-19883317
GAATGTCGGGATCTGAGACGGGAATGATGG19883298CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:24146558-24146577
GTATGTCGGGATCTGAGACGGGAATGATGG24146558CGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCG
Theobroma cacao isolate Sca6 chromosome 8.
CP139298.1:4968122-4968141
AAATGTCGGGATCTGAGACGGGAGTGATGA4968122CGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCG
Theobroma cacao genome assembly, chromosome: VIII.
LT594795.1:4886046-4886065
AAATGTCGGGATCTGAGACGGGAGTGATGA4886046CGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCG
Theobroma cacao genome assembly, chromosome: 8.
OY284445.1:4988735-4988754
AAATGTCGGGATCTGAGACGGGAGTGATGA4988735CGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCG
Theobroma cacao genome assembly, chromosome: 8.
OY284455.1:4952216-4952235
AAATGTCGGGATCTGAGACGGGAGTGATGA4952216CGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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