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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:54:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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GF-FV-P3C3 Marsh grapefruit young flavedo Citrus x paradisi cDNA, mRNA sequence.
BE208883.1:50-69
CAACGCCGCTAACAAAACAAATACAAATCT50TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
Citrus unshiu cDNA, clone: pcMFRI616.34, 5'-end sequence.
C23883.1:45-64
GAGCAACGCTAACAAAACAAATATAAATCT45TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
UCRCS01_02db10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02db10, mRNA sequence.
CB291369.1:64-83
CAACGCCGCTAACAAAACAAATACAAATCT64TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
UCRCS01_05df03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df03, mRNA sequence.
CB293309.1:59-78
CAACGCCGCTAACAACACAAATACAAATCT59TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
USDA-FP_6471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63H08 5', mRNA sequence.
CK740327.1:56-75
TAACAACGCTAACAAAACAAATACAAATCT56TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
CGF1004520_C03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C03 5', mRNA sequence.
CK936611.1:71-90
CAACGCCGCTAACAAAACAAATACAAATCT71TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
CGF1004520_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_B09 5', mRNA sequence.
CK936628.1:66-85
CAACGCCGCTAACAAAACAAATACAAATCT66TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
CGF1004476_B02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IIF_B02 5', mRNA sequence.
CK938253.1:65-84
NAACGCCGCTAACAAAACAAATACAAATCT65TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
Citrus unshiu mRNA, clone: MFI6G34, 5'-end sequence, expressed in juice sac.
DC893414.1:38-57
AGCAACGCTGAACAAAACAAATATAAATCT38TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
Citrus unshiu mRNA, clone: MFI6G34, 5'-end sequence, expressed in juice sac.
DC893414.1:559-578
GAGCAACGCTAACAAAACAAATATAAATCT559TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
USDA-FP/ARO_15144 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-22_G11 5', mRNA sequence.
DN959314.1:42-61
CAACAACGCTAACAAAACAAATATAAATCT42TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
KN0AAL3DA09FM1 KCl-Salt1 Citrus reshni cDNA 5', mRNA sequence.
DY306812.1:48-67
TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
Volcani_8_10_F2 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX447630.1:85-104
TAACGCCGCTAACAAAACAAGTACAAATCT85TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTCCAAACAA
CS00-C1-101-030-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY661221.1:74-93
CAACGCCGCTAACAAAACAAATACAAATCT74TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
CS00-C5-003-035-A12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY746552.1:48-67
TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAACAAT
CS00-C5-003-054-E06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY748181.1:48-67
CCTTAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
KN0AAL3DA09FM1 KCl_Salt1 Citrus reshni cDNA clone KN0AAL3DA09, mRNA sequence.
FC918978.1:48-67
TAACAACGCTAACAAAACAAATACAAATCT48TGTTGAGCGAGCTTAAACGAATTGATTCCCCTTTCATTTCTTTCAAACAA
UCRCS01_02db10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02db10, mRNA sequence.
CB291368.1:430-449
TTGTTTGAAAGAAATGAAAGGGGAATCAAT430TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGGCGTTG
UCRCS01_05df03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df03, mRNA sequence.
CB293308.1:467-486
TTGTTTGAAAGAAATGAAAGGGGAATCAAT467TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGGCGTTG
Citrus unshiu mRNA, clone: RGP0175, 5'-end sequence, expressed in root.
DC896431.1:482-501
TTGTTTGAAAGAAATGAAAGGGGAATCAAT482TCGTTTAAGCTCGCTCAACAAGATTTATATTTGTTTTGTTAGCGTTGTTG
IC0AAA96AA05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY298597.1:618-637
TTGTTTGAAAGAAATGAAAGGGGAATCAAT618TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA
IC0AAA96AA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96AA05, mRNA sequence.
FC912579.1:618-637
TTGTTTGAAAGAAATGAAAGGGGAATCAAT618TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA
Citrus sinensis genome assembly, chromosome: 2.
OY754319.1:16224607-16224626
TTGTTTGAAAGAAATGAAAGGGGAATCAAT16224607TCGTTTAAGCTCGCTCAACAAGATTTGTATTTGTTTTGTTAGCGTTGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTTGAGCGAGCTTAAACGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTGAGCGAGCTTAAACGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.993 | 0.985 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAGCGAGCTTAAACGA&k=0&no_gap=0&offset=0&limit=50
1.356 | 0.362 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTTTAAGCTCGCTCAACA&k=0&no_gap=0&offset=0&limit=33
1.360 | 0.004 | cgi_end;

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