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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:13:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

011010AVBC127026PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC127026, mRNA sequence.
CN945508.1:42-65
GCTTCAGGCAATCATTTCTCTGAAACATAT42TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGAAGGACAAGCAAGGGC
TSA: Pyrus x bretschneideri Unigene31479_XinShao mRNA sequence.
JR624385.1:349-372
GCTTCAGGCAATCATTTCTCTGAAACATAT349TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGAAGGACAAGCAAGGGC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:1578078-1578101
CTATGTTTGGTTGATTTCAAATACAGATAT1578078TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:2209697-2209720
TCATGTTTGGTTGATTTCAAATACAGATAT2209697TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:1620400-1620423
CTATGTTTGGTTGATTTCAAATACAGATAT1620400TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:3088504-3088527
TCATGTTTGGTTGATTTCAAATACAGATAT3088504TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCT
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:1626405-1626428
CTATGTTTGGTTGATTTCAAATACAGATAT1626405TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:2315395-2315418
TCATGTTTGGTTGATTTCAAATACAGATAT2315395TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:1693200-1693223
CTATGTTTGGTTGATTTCAAATACAGATAT1693200TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGCCGTCATCT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:2244611-2244634
TCATGTTTGGTTGATTTCAAATACAGATAT2244611TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:2085916-2085939
TCATGTTTGGTTGATTTCAAATACAGATAT2085916TTTAACAGCAGCACAGGCAGTTTACCAGAATCATAATGTTAGTGGTCATCATCA
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:2627212-2627235
TCATGTTTGGTTGATTTCAAATACAGATAT2627212TTTAACAGCAGCACAGGCAGTTTACCAGAATCCTAATGTTAGTGGCCACCATCA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:29772286-29772309
AGATGACGGCCACTAACATTATGATTCTGG29772286TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:53777748-53777771
AGATGATGACCACTAACATTATGATTCTGG53777748TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:30809030-30809053
AGATGACGGCCACTAACATTATGATTCTGG30809030TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:47325894-47325917
TGATGATGACCACTAACATTATGATTCTGG47325894TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:28711178-28711201
AGATGACGGCCACTAACATTATGATTCTGG28711178TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:51904636-51904659
AGATGATGACCACTAACATTATGATTCTGG51904636TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus domestica genome assembly, chromosome: 8.
OU696684.1:28464009-28464032
AGATGACGGCCACTAACATTATGATTCTGG28464009TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus domestica genome assembly, chromosome: 15.
OU696691.1:53592756-53592779
AGATGATGACCACTAACATTATGATTCTGG53592756TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus domestica genome assembly, chromosome: 8.
OU744549.1:28971597-28971620
AGATGACGGCCACTAACATTATGATTCTGG28971597TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus domestica genome assembly, chromosome: 15.
OU744556.1:53333830-53333853
AGATGATGACCACTAACATTATGATTCTGG53333830TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus domestica genome assembly, chromosome: 8.
OU744960.1:28769783-28769806
AGATGACGGCCACTAACATTATGATTCTGG28769783TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus domestica genome assembly, chromosome: 15.
OU744967.1:53900882-53900905
AGATGATGACCACTAACATTATGATTCTGG53900882TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus domestica genome assembly, chromosome: 8.
OU744998.1:29674418-29674441
AGATGACGGCCACTAACATTATGATTCTGG29674418TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Malus domestica genome assembly, chromosome: 15.
OU745005.1:52927697-52927720
AGATGATGACCACTAACATTATGATTCTGG52927697TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:29005459-29005482
AGATGACGGCCACTAACATTATGATTCTGG29005459TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAG
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:33909804-33909827
AGATGACAGCCACTAACATTATGATTCTGG33909804TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:41937180-41937203
GATGAATGGCCACTAACATTATGATTCTGG41937180TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATGA
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:23080713-23080736
AGATGACAGCCACTAACATTATGATTCTGG23080713TAAACTGCCTGTGCTGCTGTTAAAATATCTGTATTTGAAATCAACCAAACATAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTAACAGCAGCACAGGCAGTTTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTAACAGCAGCACAGGCAGTTTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.219 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=TTTAACAGCAGCACAGGCAGTTTA&k=0&no_gap=0&offset=0&limit=50
0.339 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=TAAACTGCCTGTGCTGCTGTTAAA&k=0&no_gap=0&offset=0&limit=38
0.351 | 0.012 | cgi_end;

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