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許容するミスマッチ/ギャップの数: (検索する塩基配列の長さの25%まで)
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Database Source Group Species 生物種 Latin name Assembly information
hg38 UCSC Mammal Human ヒト Homo sapiens GRCh38/hg38 (Dec, 2013)
hg19 UCSC Mammal Human ヒト Homo sapiens GRCh37/hg19 (Feb, 2009)
hg18 UCSC Mammal Human ヒト Homo sapiens NCBI36/hg18 (Mar, 2006)
mm10 UCSC Mammal Mouse マウス Mus musculus GRCm38/mm10 (Dec, 2011)
mm9 UCSC Mammal Mouse マウス Mus musculus NCBI37/mm9 (Jul, 2007)
rn6 UCSC Mammal Rat ラット Rattus norvegicus RGSC 6.0/rn6 (Jul, 2014)
rn5 UCSC Mammal Rat ラット Rattus norvegicus RGSC 5.0/rn5 (Mar, 2012)
vicPac2 UCSC Mammal Alpaca アルパカ Vicugna pacos Vicugna_pacos-2.0.1/vicPac2 (Mar, 2013)
dasNov3 UCSC Mammal Armadillo アルマジロ Dasypus novemcinctus Baylor/dasNov3 (Dec, 2011)
papAnu2 UCSC Mammal Baboon ヒヒ Papio anubis Baylor Panu_2.0/papAnu2 (Mar, 2012)
otoGar3 UCSC Mammal Bushbaby オオガラゴの一種 Otolemur garnettii Broad/otoGar3 (Mar, 2011)
felCat5 UCSC Mammal Cat ネコ Felis catus ICGSC Felis_catus 6.2/felCat5 (Sep, 2011)
panTro4 UCSC Mammal Chimpanzee チンパンジー Pan troglodytes CSAC 2.1.4/panTro4 (Feb, 2011)
criGri1 UCSC Mammal Chinese hamster チャイニーズハムスター Cricetulus griseus C_griseus_v1.0/criGri1 (Jul, 2013)
bosTau8 UCSC Mammal Cow ウシ Bos taurus Bos_taurus_UMD_3.1.1/bosTau8 (Jun, 2014)
canFam3 UCSC Mammal Dog イヌ Canis familiaris Broad CanFam3.1/canFam3 (Sep, 2011)
turTru2 UCSC Mammal Dolphin イルカ Tursiops truncatus Baylor Ttru_1.4/turTru2 (Oct, 2011)
loxAfr3 UCSC Mammal Elephant ゾウ Loxodonta africana Broad/loxAfr3 (Jul, 2009)
musFur1 UCSC Mammal Ferret フェレット Mustela putorius furo MusPutFur1.0/musFur1 (Apr, 2011)
nomLeu3 UCSC Mammal Gibbon テナガザル Nomascus leucogenys GGSC Nleu3.0/nomLeu3 (Oct, 2012)
gorGor3 UCSC Mammal Gorilla ゴリラ Gorilla gorilla gorilla gorGor3.1/gorGor3 (May, 2011)
cavPor3 UCSC Mammal Guinea pig モルモット Cavia porcellus Broad/cavPor3 (Feb, 2008)
eriEur2 UCSC Mammal Hedgehog ハリネズミ Erinaceus europaeus EriEur2.0/eriEur2 (May, 2012)
equCab2 UCSC Mammal Horse ウマ Equus caballus Broad/equCab2 (Sep, 2007)
dipOrd1 UCSC Mammal Kangaroo rat カンガルーネズミ Dipodomys ordii Broad/dipOrd1 (Jul, 2008)
triMan1 UCSC Mammal Manatee マナティー Trichechus manatus latirostris Broad v1.0/triMan1 (Oct, 2011)
calJac3 UCSC Mammal Marmoset マーモセット Callithrix jacchus WUGSC 3.2/calJac3 (Mar, 2009)
pteVam1 UCSC Mammal Megabat オオコウモリ Pteropus vampyrus Broad/pteVam1 (Jul, 2008)
myoLuc2 UCSC Mammal Microbat ココウモリ Myotis lucifugus Broad Institute Myoluc2.0/myoLuc2 (Jul, 2010)
balAcu1 UCSC Mammal Minke whale ミンククジラ Balaenoptera acutorostrata scammoni BalAcu1.0/balAcu1 (Oct, 2013)
micMur1 UCSC Mammal Mouse lemur ネズミキツネザル Microcebus murinus Broad/micMur1 (Jul, 2007)
hetGla2 UCSC Mammal Naked mole rat ハダカデバネズミ Heterocephalus glaber Broad HetGla_female_1.0/hetGla2 (Jan, 2012)
monDom5 UCSC Mammal Opossum オポッサム Monodelphis domestica Broad/monDom5 (Oct, 2006)
ponAbe2 UCSC Mammal Orangutan オランウータン Pongo abelii WUGSC 2.0.2/ponAbe2 (Jul, 2007)
ailMel1 UCSC Mammal Panda パンダ Ailuropoda melanoleuca BGI-Shenzhen 1.0/ailMel1 (Dec, 2009)
susScr3 UCSC Mammal Pig ブタ, イノシシ Sus scrofa SGSC Sscrofa10.2/susScr3 (Aug, 2011)
ochPri3 UCSC Mammal Pika ナキウサギ Ochotona princeps OchPri3.0/ochPri3 (May, 2012)
ornAna1 UCSC Mammal Platypus カモノハシ Ornithorhynchus anatinus WUGSC 5.0.1/ornAna1 (Mar, 2007)
oryCun2 UCSC Mammal Rabbit ウサギ Oryctolagus cuniculus Broad/oryCun2 (Apr, 2009)
rheMac3 UCSC Mammal Rhesus macaque アカゲザル Macaca mulatta BGI CR_1.0/rheMac3 (Oct, 2010)
proCap1 UCSC Mammal Rock hyrax, Cape hyrax ケープハイラックス Procavia capensis Broad/proCap1 (Jul, 2008)
oviAri3 UCSC Mammal Sheep ヒツジ Ovis aries ISGC Oar_v3.1/oviAri3 (Aug, 2012)
sorAra2 UCSC Mammal Shrew トガリネズミ Sorex araneus Broad/sorAra2 (Aug, 2008)
choHof1 UCSC Mammal Sloth ナマケモノ Choloepus hoffmanni Broad/choHof1 (Jul, 2008)
speTri2 UCSC Mammal Squirrel リス Spermophilus tridecemlineatus Broad/speTri2 (Nov, 2011)
saiBol1 UCSC Mammal Squirrel monkey リスザル Saimiri boliviensis Broad/saiBol1 (Oct, 2011)
tarSyr1 UCSC Mammal Tarsier メガネザル Tarsius syrichta Broad/tarSyr1 (Aug, 2008)
sarHar1 UCSC Mammal Tasmanian devil タスマニアデビル Sarcophilus harrisii WTSI Devil_ref v7.0/sarHar1 (Feb, 2011)
echTel2 UCSC Mammal Tenrec テンレック Echinops telfairi Broad/echTel2 (Nov, 2012)
tupBel1 UCSC Mammal Tree shrew ツパイ Tupaia belangeri Broad/tupBel1 (Dec, 2006)
macEug2 UCSC Mammal Wallaby ワラビー Macropus eugenii TWGS Meug_1.1/macEug2 (Sep, 2009)
cerSim1 UCSC Mammal White rhinoceros シロサイ Ceratotherium simum CerSimSim1.0/cerSim1 (May, 2012)
allMis1 UCSC Vertebrate American alligator アメリカアリゲーター Alligator mississippiensis allMis0.2/allMis1 (Aug, 2012)
gadMor1 UCSC Vertebrate Atlantic cod タイセイヨウダラ Gadus morhua Genofisk GadMor_May2010/gadMor1 (May, 2010)
melUnd1 UCSC Vertebrate Budgerigar セキセイインコ Melopsittacus undulatus WUSTL v6.3/melUnd1 (Sep, 2011)
galGal4 UCSC Vertebrate Chicken ニワトリ Gallus gallus ICGSC Gallus_gallus-4.0/galGal4 (Nov, 2011)
latCha1 UCSC Vertebrate Coelacanth シーラカンス Latimeria chalumnae Broad/latCha1 (Aug, 2011)
calMil1 UCSC Vertebrate Elephant shark ゾウギンザメ Callorhinchus milii Callorhinchus_milii-6.1.3/calMil1 (Dec, 2013)
fr3 UCSC Vertebrate Fugu フグ Takifugu rubripes FUGU5/fr3 (Oct, 2011)
petMar2 UCSC Vertebrate Lamprey ヤツメウナギ Petromyzon marinus WUGSC 7.0/petMar2 (Sep, 2010)
anoCar2 UCSC Vertebrate Lizard トカゲ Anolis carolinensis Broad AnoCar2.0/anoCar2 (May, 2010)
oryLat2 UCSC Vertebrate Medaka メダカ Oryzias latipes NIG/UT MEDAKA1/oryLat2 (Oct, 2005)
geoFor1 UCSC Vertebrate Medium ground finch ガラパゴスフィンチ Geospiza fortis GeoFor_1.0/geoFor1 (Apr, 2012)
oreNil2 UCSC Vertebrate Nile tilapia ナイルティラピア Oreochromis niloticus Broad oreNil1.1/oreNil2 (Jan, 2011)
chrPic1 UCSC Vertebrate Painted turtle ニシキガメ Chrysemys picta bellii v3.0.1/chrPic1 (Dec, 2011)
gasAcu1 UCSC Vertebrate Stickleback トゲウオ Gasterosteus aculeatus Broad/gasAcu1 (Feb, 2006)
tetNig2 UCSC Vertebrate Tetraodon ミドリフグ Tetraodon nigroviridis Genoscope 8.0/tetNig2 (Mar, 2007)
melGal1 UCSC Vertebrate Turkey シチメンチョウ Meleagris gallopavo TGC Turkey_2.01/melGal1 (Dec, 2009)
xenTro3 UCSC Vertebrate Western clawed frog ネッタイツメガエル Xenopus tropicalis JGI 4.2/xenTro3 (Nov, 2009)
taeGut2 UCSC Vertebrate Zebra finch キンカチョウ Taeniopygia guttata WashU taeGut324/taeGut2 (Feb, 2013)
danRer7 UCSC Vertebrate Zebrafish ゼブラフィッシュ Danio rerio Zv9/danRer7 (Jul, 2010)
ci2 UCSC Deuterostome Transparent sea squirt カタユウレイボヤ Ciona intestinalis JGI 2.1/ci2 (Mar, 2005)
braFlo1 UCSC Deuterostome Lancelet ナメクジウオ Branchiostoma floridae JGI 1.0/braFlo1 (Mar, 2006)
strPur2 UCSC Deuterostome Purple sea urchin ムラサキウニ Strongylocentrotus purpuratus Baylor 2.1/strPur2 (Sep, 2006)
anoGam1 UCSC Insect African malaria mosquito ハマダラカ Anopheles gambiae IAGEC MOZ2/anoGam1 (Feb, 2003)
apiMel2 UCSC Insect Honeybee ミツバチ Apis mellifera Baylor 2.0/apiMel2 (Jan, 2005)
droAna2 UCSC Insect D. ananassae (Fruit fly) アナナスショウジョウバエ Drosophila ananassae Agencourt prelim/droAna2 (Aug, 2005)
droEre1 UCSC Insect D. erecta (Fruit fly) キリシマキノコショウジョウバエ Drosophila erecta Agencourt prelim/droEre1 (Aug, 2005)
droGri1 UCSC Insect D. grimshawi (Fruit fly) ショウジョウバエ属 Drosophila grimshawi Agencourt prelim/droGri1 (Aug, 2005)
dm6 UCSC Insect D. melanogaster (Fruit fly) キイロショウジョウバエ Drosophila melanogaster BDGP Release 6 + ISO1 MT/dm6 (Aug, 2014)
dm3 UCSC Insect D. melanogaster (Fruit fly) キイロショウジョウバエ Drosophila melanogaster BDGP R5/dm3 (Apr, 2006)
droMoj2 UCSC Insect D. mojavensis (Fruit fly) ショウジョウバエ属 Drosophila mojavensis Agencourt prelim/droMoj2 (Aug, 2005)
droPer1 UCSC Insect D. persimilis (Fruit fly) ショウジョウバエ属 Drosophila persimilis Broad/droPer1 (Oct, 2005)
dp3 UCSC Insect D. pseudoobscura (Fruit fly) ニセウスグロショウジョウバエ Drosophila pseudoobscura FlyBase 1.03/dp3 (Nov, 2004)
droSec1 UCSC Insect D. sechellia (Fruit fly) セイシェルショウジョウバエ Drosophila sechellia Broad/droSec1 (Oct, 2005)
droSim1 UCSC Insect D. simulans (Fruit fly) オナジショウジョウバエ Drosophila simulans WUGSC mosaic 1.0/droSim1 (Apr, 2005)
droVir2 UCSC Insect D. virilis (Fruit fly) クロショウジョウバエ Drosophila virilis Agencourt prelim/droVir2 (Aug, 2005)
droYak2 UCSC Insect D. yakuba (Fruit fly) ヤクバショウジョウバエ Drosophila yakuba WUGSC 7.1/droYak2 (Nov, 2005)
caePb2 UCSC Nematode C. brenneri (Nematode worm) 線虫 Caenorhabditis brenneri WUGSC 6.0.1/caePb2 (Feb, 2008)
cb3 UCSC Nematode C. briggsae (Nematode worm) 線虫 Caenorhabditis briggsae WUGSC 1.0/cb3 (Jan, 2007)
ce10 UCSC Nematode C. elegans (Nematode worm) 線虫 Caenorhabditis elegans WS220/ce10 (Oct, 2010)
caeJap1 UCSC Nematode C. japonica (Nematode worm) 線虫 Caenorhabditis japonica WUGSC 3.0.2/caeJap1 (Mar, 2008)
caeRem3 UCSC Nematode C. remanei (Nematode worm) 線虫 Caenorhabditis remanei WUGSC 15.0.1/caeRem3 (May, 2007)
priPac1 UCSC Nematode P. pacificus (Parasitic nematode) 線虫 Pristionchus pacificus WUGSC 5.0/priPac1 (Feb, 2007)
sacCer3 UCSC Other Budding yeast 出芽酵母 Saccharomyces cerevisiae SacCer_Apr2011/sacCer3 (Apr, 2011)
aplCal1 UCSC Other Sea hare アメフラシ Aplysia californica Broad 2.0/aplCal1 (Sep, 2008)
eboVir3 UCSC Viruses Ebola virus エボラウイルス Filoviridae ebolavirus Sierra Leone G3683/KM034562.1/eboVir3 (Jun, 2014)
OryAfe1.0 Ensembl Mammal Aardvark ツチブタ Orycteropus afer OryAfe1.0 (May, 2012)
PoeFor_5.1.2 Ensembl Vertebrate Amazon molly アマゾンモーリー Poecilia formosa Poecilia_formosa-5.1.2 (Oct, 2013)
CSAV2.0 Ensembl Deuterostome Pacific transparent sea squirt ユウレイボヤ Ciona savignyi CSAV 2.0 (Oct, 2005)
AstMex102 Ensembl Vertebrate Blind cave fish ブラインドケープテトラ Astyanax mexicanus AstMex102 (Apr, 2013)
PelSin_1.0 Ensembl Vertebrate Chinese softshell turtle スッポン Pelodiscus sinensis PelSin_1.0 (Oct, 2011)
MacFas5.0 Ensembl Mammal Crab-eating macaque カニクイザル Macaca fascicularis MacFas5.0 (Jun, 2013)
BGI_duck_1.0 Ensembl Vertebrate Duck マガモ Anas platyrhynchos BGI_duck_1.0 (Apr, 2013)
FicAlb_1.4 Ensembl Vertebrate Flycatcher シロエリヒタキ Ficedula albicollis FicAlb_1.4 (Jan, 2012)
Pham Ensembl Mammal Hamadryas baboon マントヒヒ Papio hamadryas Pham (Nov, 2008)
Xipmac4.4.2 Ensembl Vertebrate Platyfish サザンプラティフィッシュ Xiphophorus maculatus Xipmac4.4.2 (Jan, 2012)
MicOch1.0 Ensembl Mammal Prairie vole ハタネズミ Microtus ochrogaster MicOch1.0 (Nov, 2012)
PhyMac_2.0.2 Ensembl Mammal Sperm whale マッコウクジラ Physeter macrocephalus PhyMac_2.0.2 (Sep, 2013)
LepOcu1 Ensembl Vertebrate Spotted gar スポッテッドガー Lepisosteus oculatus LepOcu1 (Dec, 2011)
ChlSab1.1 Ensembl Mammal Green monkey ミドリザル Chlorocebus sabaeus ChlSab1.1 (Mar, 2014)
Acyr_2.0 EnsemblMetazoa Insect Pea aphid エンドウヒゲナガアブラムシ Acyrthosiphon pisum Acyr_2.0 (Jun, 2010)
AaegL3 EnsemblMetazoa Insect Yellowfever mosquito ネッタイシマカ Aedes aegypti AaegL3 (Dec, 2013)
Aqu1 EnsemblMetazoa Metazoa Sponge カイメン Amphimedon queenslandica Aqu1 (Oct, 2010)
AdarC3 EnsemblMetazoa Insect Mosquito ハマダラカ Anopheles darlingi AdarC3 (Jan, 2014)
Attacep1.0 EnsemblMetazoa Insect Leafcutter ant ハキリアリ Atta cephalotes Attacep1.0 (Jul, 2012)
ASM15162v1 EnsemblMetazoa Insect Silkworm カイコガ Bombyx mori ASM15162v1 (Feb, 2013)
B_malayi_3.0 EnsemblMetazoa Nematode Filarial nematode worm マレー糸状虫 Brugia malayi B_malayi-3.0 (Dec, 2012)
Capte_v1.0 EnsemblMetazoa Metazoa Polychaete worm イトゴカイ Capitella teleta Capitella teleta v1.0 (Dec, 2012)
oyster_v9 EnsemblMetazoa Metazoa Pacific oyster マガキ Crassostrea gigas oyster_v9 (Sep, 2012)
CpipJ2 EnsemblMetazoa Insect Southern house mosquito ネッタイイエカ Culex quinquefasciatus CpipJ2 (Jan, 2007)
DanPle_1.0 EnsemblMetazoa Insect Monarch butterfly オオカバマダラ Danaus plexippus DanPle_1.0 (Nov, 2011)
Dappu_V1.0 EnsemblMetazoa Metazoa Water flea ミジンコ Daphnia pulex V1.0 (Feb, 2011)
DendPond_1.0 EnsemblMetazoa Insect Mountain pine beetle キクイムシ Dendroctonus ponderosae DendPond_male_1.0 (Apr, 2013)
dwil_caf1 EnsemblMetazoa Insect D. willistoni (Fruit fly) ショウジョウバエ属 Drosophila willistoni dwil_caf1 (Jul, 2008)
Hmel1 EnsemblMetazoa Insect Postman butterfly ドクチョウ Heliconius melpomene Hmel1 (Feb, 2012)
Helro1 EnsemblMetazoa Metazoa Californian leech ヒル Helobdella robusta Helro1 (Dec, 2012)
IscaW1 EnsemblMetazoa Metazoa Black-legged tick クロアシマダニ Ixodes scapularis IscaW1 (Aug, 2007)
Loa_loa_V3 EnsemblMetazoa Nematode Eye worm ロア糸状虫 Loa loa Loa_loa_V3 (Jan, 2010)
Lotgi1 EnsemblMetazoa Metazoa Giant owl limpet カサガイ Lottia gigantea Lotgi1 (Jan, 2013)
Msca1 EnsemblMetazoa Insect Humpbacked fly クサビノミバエ Megaselia scalaris Msca1 (Feb, 2013)
MelCinx1.0 EnsemblMetazoa Insect Glanville fritillary グランヴィルヒョウモンモドキ Melitaea cinxia MelCinx1.0 (Jul, 2014)
MneLei EnsemblMetazoa Metazoa Sea walnut ムネミオプシス・レイディ Mnemiopsis leidyi MneLei_Aug2011 (Sep, 2011)
Nvit_2.1 EnsemblMetazoa Insect Parasitic wasp キョウソヤドリコバチ Nasonia vitripennis Nvit_2.1 (Nov, 2012)
ASM20922v1 EnsemblMetazoa Metazoa Starlet sea anemone ムシモドキギンチャク科 Nematostella vectensis ASM20922v1 (Sep, 2007)
Cameroon_v3 EnsemblMetazoa Nematode O. volvulus (Parasitic nematode) 回旋糸状虫 Onchocerca volvulus Cameroon_v3 (Nov, 2013)
PhumU2 EnsemblMetazoa Insect Body louse ヒトジラミ Pediculus humanus PhumU2 (Nov, 2008)
RproC1 EnsemblMetazoa Insect Triatomid bug サシガメ Rhodnius prolixus RproC1 (Dec, 2010)
ASM23792v2 EnsemblMetazoa Metazoa Blood fluke マンソン住血吸虫 Schistosoma mansoni ASM23792v2 (Apr, 2012)
Si_gnG EnsemblMetazoa Insect Red imported fire ant アカヒアリ Solenopsis invicta Si_gnG (Feb, 2011)
Smar1 EnsemblMetazoa Metazoa European centipede ムカデ Strigamia maritima Smar1 (Feb, 2013)
ASM23943v1 EnsemblMetazoa Metazoa Two-spotted spider mite ナミハダニ Tetranychus urticae ASM23943v1 (Nov, 2011)
Tcas3 EnsemblMetazoa Insect Red flour beetle コクヌストモドキ Tribolium castaneum Tcas3 (Feb, 2010)
Tspiralis1 EnsemblMetazoa Nematode Trichina worm 旋毛虫 Trichinella spiralis Tspiralis1 (Mar, 2011)
ASM15027v1 EnsemblMetazoa Metazoa T. adhaerens センモウヒラムシ Trichoplax adhaerens ASM15027v1 (Aug, 2006)
ZooNev1.0 EnsemblMetazoa Insect Dampwood termite ネバダオオシロアリ Zootermopsis nevadensis ZooNev1.0 (Jun, 2014)
ASM34733v1 EnsemblPlants Plant Tausch's goatgrass タルホコムギ Aegilops tauschii ASM34733v1 (Dec, 2013)
AMTR1.0 EnsemblPlants Plant A. trichopoda アムボレラ・トリコポダ Amborella trichopoda AMTR1.0 (Jan, 2014)
Araly_v.1.0 EnsemblPlants Plant Lyre-leaved rock-cress シロイヌナズナ属 Arabidopsis lyrata v.1.0 (Dec, 2008)
TAIR10_en EnsemblPlants Plant Thale cress シロイヌナズナ Arabidopsis thaliana TAIR10 (Sep, 2010)
Bradi_v1.0 EnsemblPlants Plant Purple false brome セイヨウヤマカモジ,
ミナトカモジグサ
Brachypodium distachyon v1.0 (Jan, 2009)
Braol_v2.1 EnsemblPlants Plant Wild cabbage ヤセイカンラン,
ワイルドキャベツ
Brassica oleracea v2.1
IVFCAASv1 EnsemblPlants Plant Chinese cabbage ハクサイ, サントウサイ Brassica rapa ssp. pekinensis IVFCAASv1 (Aug, 2009)
Chlre_v3.1 EnsemblPlants Plant Green algae クラミドモナス Chlamydomonas reinhardtii v3.1 (Nov, 2007)
ASM9120v1 EnsemblPlants Plant Red alga シアニディオシゾン Cyanidioschyzon merolae ASM9120v1 (Nov, 2008)
Soybn_V1.0 EnsemblPlants Plant Soybean ダイズ Glycine max V1.0 (Jan, 2010)
Horvu_v1 EnsemblPlants Plant Barley オオムギ Hordeum vulgare 082214v1 (Mar, 2012)
Lperr_V1.4 EnsemblPlants Plant L. perrieri イネ科サヤヌカグサ属 Leersia perrieri Lperr_V1.4 (Mar, 2014)
MedtrA17_4.0 EnsemblPlants Plant Barrel medic タルウマゴヤシ Medicago truncatula str. A17 MedtrA17_4.0 (Jun, 2014)
MA1 EnsemblPlants Plant Banana バナナ Musa acuminata MA1 (Aug, 2012)
Obart_v1.0 EnsemblPlants Plant African wild rice イネ・野生種 Oryza barthii Obart_v1.0 (Apr, 2014)
Orybr_v1.4b EnsemblPlants Plant African wild rice イネ・野生種 Oryza brachyantha Oryza_brachyantha.v1.4b (May, 2011)
AGI1.1 EnsemblPlants Plant African wild rice イネ・野生種 Oryza glaberrima AGI1.1 (May, 2011)
Orygl EnsemblPlants Plant Brazilian wild rice イネ・野生種 Oryza glumaepatula ALNU02000000 (Aug, 2013)
Orylo_v0117 EnsemblPlants Plant Longstamen rice イネ・野生種 Oryza longistaminata v0117-2013Aug (Aug, 2013)
Oryme_v1.3 EnsemblPlants Plant Australian wild rice イネ・野生種 Oryza meridionalis Oryza_meridionalis_v1.3 (Oct, 2014)
Oryni EnsemblPlants Plant Indian wild rice イネ・野生種 Oryza nivara AWHD00000000 (Aug, 2013)
Orypu EnsemblPlants Plant Red rice イネ・野生種 Oryza punctata AVCL00000000 (Aug, 2013)
PRJEB4137 EnsemblPlants Plant Brownbeard rice イネ・野生種 Oryza rufipogon PRJEB4137 (Aug, 2013)
ASM465v1 EnsemblPlants Plant Rice (Indica) イネ・インディカ種 Oryza sativa ssp. indica ASM465v1 (Jan, 2005)
ASM9206v1 EnsemblPlants Plant O. lucimarinus オストレオコッカス Ostreococcus lucimarinus ASM9206v1 (Jan, 2011)
ASM242v1 EnsemblPlants Plant Moss ヒメツリガネゴケ Physcomitrella patens ASM242v1 (Jul, 2006)
Poptr_JGI2.0 EnsemblPlants Plant Western balsam poplar ポプラ, コットンウッド Populus trichocarpa JGI2.0 (Jan, 2010)
Prupe1_0 EnsemblPlants Plant Peach モモ Prunus persica Prupe1_0 (Mar, 2013)
Selml_v1.0 EnsemblPlants Plant Spikemoss イヌタカヒバ Selaginella moellendorffii v1.0 (May, 2011)
Setit_JGIv2.0 EnsemblPlants Plant Foxtail millet アワ Setaria italica JGIv2.0 (Jan, 2012)
SL2.50 EnsemblPlants Plant Tomato トマト Solanum lycopersicum str. Heinz 1706 SL2.50 (Oct, 2014)
SolTub_3.0 EnsemblPlants Plant Potato ジャガイモ Solanum tuberosum SolTub_3.0 (May, 2011)
Sorbi1 EnsemblPlants Plant Sorghum モロコシ Sorghum bicolor Sorbi1 (Dec, 2007)
Thecc_20110822 EnsemblPlants Plant Cacao カカオ Theobroma cacao Theobroma_cacao_20110822 (May, 2014)
IWGSC1.0 EnsemblPlants Plant Wheat コムギ Triticum aestivum IWGSC1.0+popseq (Nov, 2014)
ASM34745v1 EnsemblPlants Plant Red wild einkorn ウラルツコムギ Triticum urartu ASM34745v1 (Apr, 2013)
IGGP_12x EnsemblPlants Plant Grape ブドウ Vitis vinifera IGGP_12x (Jun, 2011)
AGPv3 EnsemblPlants Plant Maize, Corn トウモロコシ Zea mays AGPv3 (Apr, 2013)
Ppatens_251_v3 Phytozome Plant Moss ヒメツリガネゴケ Physcomitrella patens v3.0 (Oct, 2007)
Smoellendorffii_91_v1 Phytozome Plant Spikemoss イヌタカヒバ Selaginella moellendorffii v1.0 (Dec, 2007)
Creinhardtii_281_v5_5 Phytozome Plant Green algae クラミドモナス Chlamydomonas reinhardtii v5.5 (May, 2014)
Olucimarinus_231_v2 Phytozome Plant O. lucimarinus オストレオコッカス Ostreococcus lucimarinus v2.0 (Jan, 2011)
Cgrandiflora_v1 Phytozome Plant C. grandiflora ナズナ属 Capsella grandiflora v1.1
Crubella_v1 Phytozome Plant Red shepherd's purse ナズナ属 Capsella rubella v1.0
Cpapaya_r.Dec2008 Phytozome Plant Papaya パパイア Carica papaya ASGPBv0.4
Cclementina_v1 Phytozome Plant Clementine クレメンタイン Citrus clementina v1.0
Csinensis_v1 Phytozome Plant Sweet orange スイートオレンジ Citrus sinensis v1.1
CsubellipsoideaC169_v2.0 Phytozome Plant C. subellipsoidea コッコミクサ属 Coccomyxa subellipsoidea v2.0
Csativus_v1 Phytozome Plant Cucumber キュウリ Cucumis sativus v1.0
Egrandis_v2.0 Phytozome Plant Eucalyptus ローズガム Eucalyptus grandis v2.0
Fvesca_v1.1 Phytozome Plant Strawberry エゾヘビイチゴ Fragaria vesca v1.1
Graimondii_v2.0 Phytozome Plant Cotton ワタ Gossypium raimondii v2.1
Lusitatissimum_BGIv1.0 Phytozome Plant Flax アマ Linum usitatissimum v1.0
Mdomestica_v1.0 Phytozome Plant Apple リンゴ Malus domestica v1.0
Mesculenta_v6 Phytozome Plant Cassava キャッサバ Manihot esculenta v6.1
MpusillaCCMP1545_v3.0 Phytozome Plant Picoplanktonic green alga ミクロモナス Micromonas pusilla v3.0
MpusillaRCC299_v3.0 Phytozome Plant Picoplanktonic green alga ミクロモナス Micromonas pusilla v3.0
Mguttatus_v2.0 Phytozome Plant Monkey flower ミムルス Mimulus guttatus v2.0
Ppersica_v2.0 Phytozome Plant Peach ハナモモ Prunus persica v2.1
Rcommunis_TIGR.0.1 Phytozome Plant Castor bean トウゴマ Ricinus communis v0.1
Spolyrhiza_v1 Phytozome Plant Giant duckweed ウキクサ Spirodela polyrhiza v2
Vcarteri_v2 Phytozome Plant Green alga ボルボックス Volvox carteri v2.0
Ptrichocarpa_v3.0 Phytozome Plant Western balsam poplar ポプラ, コットンウッド Populus trichocarpa v3.0
Xenla9 Xenbase Vertebrate African clawed frog アフリカツメガエル Xenopus laevis XenBase/JGI 9.1
Xenla7 Xenbase Vertebrate African clawed frog アフリカツメガエル Xenopus laevis JGI 7.1/Xenla7 (Dec, 2013)
Xentr9 Xenbase Vertebrate Western clawed frog ネッタイツメガエル Xenopus tropicalis XenBase/JGI 9.0
Xentr8 Xenbase Vertebrate Western clawed frog ネッタイツメガエル Xenopus tropicalis XenBase/JGI 8.0
Xentr7 Xenbase Vertebrate Western clawed frog ネッタイツメガエル Xenopus tropicalis XenBase/JGI 7.1
TAIR10 Plant Thale cress シロイヌナズナ Arabidopsis thaliana TAIR10 (Nov, 2010)
rice RAP-DB Plant Rice (Japonica) イネ・ジャポニカ種 Oryza sativa ssp. japonica Os-Nipponbare-Reference-IRGSP-1.0 (Oct, 2011)
sorBic Plant Sorghum モロコシ Sorghum bicolor v2.1 (May, 2013)
Brana_v4.1 Genoscope Plant Rapeseed セイヨウアブラナ Brassica napus Genoscope v4.1 (Aug, 2014)
Brapa_v1.5 Plant Chinese cabbage ハクサイ, サントウサイ Brassica rapa ssp. pekinensis v1.5 (May, 2013)
lotus_r3.0 Kazusa Plant Japanese trefoil ミヤコグサ Lotus japonicus build 3.0 (Aug, 2015)
BX Plant Tobacco (BX) タバコ Nicotiana tabacum Ntab-BX (2014)
Niben_v1.0.1 Plant Tobacco ベンサミアナタバコ Nicotiana benthamiana v1.0.1 (Jul, 2014)
adzuki_ver3 Plant Adzuki bean アズキ Vigna angularis ver3 (Nov, 2011)
RSA_r1.0 Kazusa Plant Radish ダイコン Raphanus sativus RSA_r1.0 (May, 2014)
fragaria_vesca_v2.0.a1 Plant Strawberry エゾヘビイチゴ Fragaria vesca v2.0.a1 (Dec, 2014)
malus_x_domestica_v1.0p Plant Apple リンゴ Malus domestica v1.0p (Aug, 2012)
asagao Plant Japanese morning glory アサガオ Ipomoea nil
(Pharbitis nil)
Tokyo Kokei Standard; TKS (Sep, 2016)
SL3.0 Plant Tomato トマト Solanum lycopersicum SL3.00 (Feb, 2017)
SL2.4 Plant Tomato トマト Solanum lycopersicum SL2.40 (Jan, 2011)
CM3.5.1 Plant Melon メロン Cucumis melo v3.5.1 (Oct, 2013)
PI183967 Plant Cucumber (PI183967) キュウリ Cucumis sativus PI183967 (Apr, 2013)
ChineseLong_v2 Plant Cucumber (Chinese long) キュウリ Cucumis sativus v2
A_chinensis_Hongyang Plant Golden kiwi, Kiwifruit オニマタタビ, ゴールデンキウイ Actinidia chinensis Actinidia chinensis genome
Mpolymorpha_3.1 Plant Liverwort ゼニゴケ Marchantia polymorpha Marchantia polymorpha genome JGI 3.1
Aros_1.0 NCBI Insect Turnip sawfly, Coleseed sawfly カブラハバチ Athalia rosae Aros_1.0 (Mar, 2013)
Bomo_silkbase SilkBase Insect Silkworm カイコガ Bombyx mori SilkBase assembly (Jan, 2017)
bmor1 Ensembl Insect Silkworm カイコガ Bombyx mori Bmor1 (Apr, 2008)
pombe EnsemblFungi Fungi Fission yeast (972h-) 分裂酵母 Schizosaccharomyces pombe ASM294v2 (Nov, 2007)
MG8 EnsemblFungi Fungi Rice blast fungus (70-15) イネいもち病菌 Magnaporthe oryzae MG8 (Sep, 2011)
ASM644v2 EnsemblFungi Fungi Marine yeast (CBS767) 耐塩性酵母 Debaryomyces hansenii ASM644v2 (Feb, 2015)
ASM251v1 EnsemblFungi Fungi Kluyveromyces yeast Kluyveromyces酵母 Kluyveromyces lactis ASM251v1 (Feb, 2015)
ASM252v1 EnsemblFungi Fungi Oleaginous yeast アルカン資化性酵母 Yarrowia lipolytica ASM252v1 (May, 2012)
RR EnsemblFungi Fungi Wheat head blight fungus フザリウム菌 Fusarium graminearum
(Gibberella zeae)
RR (Nov, 2014)
CC3 EnsemblFungi Fungi Inky cap fungus ウシグソヒトヨタケ Coprinopsis cinerea
(Hormographiella aspergillata)
CC3 (Aug, 2014)
ASM24337v1 EnsemblFungi Fungi Torulaspora yeast Torulaspora酵母 Torulaspora delbrueckii ASM24337v1 (Feb, 2015)
RHOziaDV1.0 NCBI Fungi Oleaginous yeast Rhodotorula酵母 Rhodotorula toruloides RHOziaDV1.0 (Apr, 2013)
A_nidulans_FGSC_A4 AspGD Fungi A. nidulans アスペルギルス Aspergillus nidulans
(Emericella nidulans)
s10-m04-r06 (Apr, 2016)
A_fumigatus_Af293 AspGD Fungi A. fumigatus アスペルギルス Aspergillus fumigatus
(Neosartorya fumigata)
s03-m05-r06 (Apr, 2016)
A_oryzae_RIB40 AspGD Fungi A. oryzae 麹菌, ニホンコウジカビ Aspergillus oryzae s01-m09-r03 (Oct, 2015)
C_glabrata_CBS138 CGD Fungi C. glabrata カンジダ Candida glabrata
(Torulopsis glabrata)
s02-m07-r08 (Jun, 2016)
C_albicans_SC5314 CGD Fungi C. albicans カンジダ Candida albicans Assembly 21, A21-s02-m09-r10 (Feb, 2016)
JCVI_PMFA1_2.0 NCBI Fungi P. marneffei アオカビ, ペニシリウム Penicillium marneffei
(Talaromyces marneffei)
JCVI-PMFA1-2.0 (Oct, 2008)
macaque_CE_1 Mammal Crab-eating macaque カニクイザル Macaca fascicularis CE_1.0 (Jul, 2011)
MesAur1.0 Mammal Golden hamster ゴールデンハムスター Mesocricetus auratus MesAur1.0 (Mar, 2013)
KH Deuterostome Transparent sea squirt カタユウレイボヤ Ciona intestinalis KH (Jul, 2008)
Spur_v3.1 SpBase Deuterostome Purple sea urchin ムラサキウニ Strongylocentrotus purpuratus Spur_v3.1 (Jun, 2011)
h7 NCBI Metazoa Hydra ヒドラ Hydra vulgaris h7 (Aug, 2008)
Hydra_RP_1.0 NCBI Metazoa Hydra ヒドラ Hydra vulgaris Hydra_RP_1.0 (Oct, 2009)
Tetth TGD Ciliophora T. thermophila テトラヒメナ Tetrahymena thermophila Tetrahymena thermophila (Jun, 2014)
Tetbo TGD Ciliophora T. borealis テトラヒメナ Tetrahymena borealis Tetrahymena borealis (Oct, 2012)
Tetel TGD Ciliophora T. elliotti テトラヒメナ Tetrahymena elliotti Tetrahymena elliotti (Oct, 2012)
Tetma TGD Ciliophora T. malaccensis テトラヒメナ Tetrahymena malaccensis Tetrahymena malaccensis (Oct, 2012)
img1 IchDB Ciliophora Ciliate 繊毛虫, イクチオフチリウス,
ハクテンチュウ, 白点虫
Ichthyophthirius multifiliis Ichthyophthirius multifiliis macronuclear genome
stylo StyloDB Ciliophora Ciliate 繊毛虫, スティロニキア Stylonychia lemnae Stylonychia lemnae macronuclear genome
oxy OxyDB Ciliophora Ciliate 繊毛虫, オキシトリカ Oxytricha trifallax Oxytricha trifallax macronuclear genome
oxymic OxyDB Ciliophora Ciliate 繊毛虫, オキシトリカ Oxytricha trifallax Oxytricha trifallax micronuclear genome
JRGv2 ToMMo Mammal Human ヒト Homo sapiens Japanese Reference Genome, JRGv2 (Jun, 2017)
decoyJRGv2 ToMMo Mammal Human ヒト Homo sapiens Decoy sequence of the Japanese Reference Genome,
decoyJRGv2 (Jun, 2017)
JRGv1 ToMMo Mammal Human ヒト Homo sapiens Japanese Reference Genome, JRGv1 (Aug, 2016)
decoyJRGv1 ToMMo Mammal Human ヒト Homo sapiens Decoy sequence of the Japanese Reference Genome,
decoyJRGv1 (Aug, 2016)
MSMv3 Mammal Mouse マウス Mus musculus MSMv3
JF1v2 Mammal Mouse マウス Mus musculus JF1v2
YOKOZUNA-1 Tardigrada Tardigrade (Water bear) ヨコヅナクマムシ Ramazzottius variornatus YOKOZUNA-1 (Sep, 2016)
ASM15095v2 EnsemblProtists Bacillariophyta Diatom 珪藻 Phaeodactylum tricornutum ASM15095v2 (Feb, 2010)
ASM14940v2 EnsemblProtists Bacillariophyta Diatom 珪藻 Thalassiosira pseudonana ASM14940v2 (May, 2014)

検索可能なデータベース一覧(ゲノム以外)

Database Source Group Species 生物種 Latin name Definition
refseq RefSeq RefSeq complete RNA release 85 (Nov, 2017)
(alias of latest refseq release)
refseq85 RefSeq RefSeq complete RNA release 85 (Nov, 2017)
refseq84 RefSeq RefSeq complete RNA release 84 (Sep, 2017)
refseq80 RefSeq RefSeq complete RNA release 80 (Jan, 2017)
refseq70 RefSeq RefSeq complete RNA release 70 (May, 2015)
hs_refseq80 RefSeq Mammal Human ヒト Homo sapiens RefSeq human RNA release 80 (Jan, 2017)
hs_refseq70 RefSeq Mammal Human ヒト Homo sapiens RefSeq human RNA release 70 (May, 2015)
hs_refseq RefSeq Mammal Human ヒト Homo sapiens RefSeq human RNA release 60 (Jul, 2013)
mm_refseq80 RefSeq Mammal Mouse マウス Mus musculus RefSeq mouse RNA release 80 (Jan, 2017)
mm_refseq70 RefSeq Mammal Mouse マウス Mus musculus RefSeq mouse RNA release 70 (May, 2015)
mm_refseq RefSeq Mammal Mouse マウス Mus musculus RefSeq mouse RNA release 60 (Jul, 2013)
rn_refseq80 RefSeq Mammal Rat ラット Rattus norvegicus RefSeq rat RNA release 80 (Jan, 2017)
rn_refseq70 RefSeq Mammal Rat ラット Rattus norvegicus RefSeq rat RNA release 70 (May, 2015)
GENCODE_27 GENCODE Mammal Human ヒト Homo sapiens GENCODE human release 27 (Aug, 2017)
GENCODE_26 GENCODE Mammal Human ヒト Homo sapiens GENCODE human release 26 (Mar, 2017)
GENCODE_M15 GENCODE Mammal Mouse マウス Mus musculus GENCODE mouse release M15 (Aug, 2017)
GENCODE_M13 GENCODE Mammal Mouse マウス Mus musculus GENCODE mouse release M13 (Mar, 2017)
ddbj110hum DDBJ DDBJ release 110.0, HUM division (Sep, 2017)
ddbj110pri DDBJ DDBJ release 110.0, PRI division (Sep, 2017)
ddbj110rod DDBJ DDBJ release 110.0, ROD division (Sep, 2017)
ddbj110mam DDBJ DDBJ release 110.0, MAM division (Sep, 2017)
ddbj110vrt DDBJ DDBJ release 110.0, VRT division (Sep, 2017)
ddbj110inv DDBJ DDBJ release 110.0, INV division (Sep, 2017)
ddbj110pln DDBJ DDBJ release 110.0, PLN division (Sep, 2017)
ddbj110bct DDBJ DDBJ release 110.0, BCT division (Sep, 2017)
ddbj110vrl DDBJ DDBJ release 110.0, VRL division (Sep, 2017)
ddbj110phg DDBJ DDBJ release 110.0, PHG division (Sep, 2017)
ddbj110pat DDBJ DDBJ release 110.0, PAT division (Sep, 2017)
ddbj110env DDBJ DDBJ release 110.0, ENV division (Sep, 2017)
ddbj110syn DDBJ DDBJ release 110.0, SYN division (Sep, 2017)
ddbj110est DDBJ DDBJ release 110.0, EST division (Sep, 2017)
ddbj110tsa DDBJ DDBJ release 110.0, TSA division (Sep, 2017)
ddbj110gss DDBJ DDBJ release 110.0, GSS division (Sep, 2017)
ddbj110htc DDBJ DDBJ release 110.0, HTC division (Sep, 2017)
ddbj110htg DDBJ DDBJ release 110.0, HTG division (Sep, 2017)
ddbj110sts DDBJ DDBJ release 110.0, STS division (Sep, 2017)
ddbj110una DDBJ DDBJ release 110.0, UNA division (Sep, 2017)
ddbj DDBJ DDBJ release 92.0 (Feb, 2013)
togogenome DBCLS TogoGenome from RefSeq 83 (Jul, 2017)
(alias of latest TogoGenome release)
togogenome83 DBCLS TogoGenome from RefSeq 83 (Jul, 2017)
prok Prokaryotic TogoGenome from RefSeq 62 (Nov, 2013)
16SrRNA DDBJ 16S rRNA of prokaryotes (Dec, 2014)
miRBase21 miRBase miRBase release 21, stem-loop microRNA sequences (Jun, 2014)
miRBase21mat miRBase miRBase release 21, mature microRNA sequences (Jun, 2014)
macaque_CE_1_cds Mammal Crab-eating macaque カニクイザル Macaca fascicularis Crab-eating macaque CDS, CE_1.0 (Jul, 2011)

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Last modified on Nov 17, 2017 by @meso_cacase at DBCLS
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